Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09840 - ( CDC48 (CELL DIVISION CYCLE 48) ATPase/ identical protein binding )
43 Proteins interacs with AT3G09840| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G01610
   | Experimental | FSW = 0.0261
| Class A:plasma membranenucleusendoplasmic reticulumClass B:cytosol | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT5G10450
| Experimentaltwo hybrid | FSW = 0.0068
| Class A:plasma membranenucleuscytosolClass B:plastidperoxisomeendoplasmic reticulumClass D:cytosol (p = 0.67) | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G71830
| Experimentaltwo hybridtwo hybridfluorescence acceptor donor pairfluorescence acceptor donor pairprotein kinase assayprotein kinase assayconfocal microscopypull downfluorescence acceptor donor pairReconstituted ComplexbiochemicalAffinity Capture-MSAffinity Capture-Westerntwo hybridin vitro | FSW = 0.0635
| Class A:plasma membraneendoplasmic reticulumClass B:unclearnucleuscytosolClass D:cytosol (p = 0.67) | SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
| AT5G19280
| Experimentaltwo hybrid | FSW = 0.0403
| Class A:plasma membraneClass B:nucleusendoplasmic reticulumcytosolClass D:cytosol (p = 0.67) | KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G05760
| ExperimentalReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0784
| Class B:plasma membranenucleusgolgiendoplasmic reticulumcytosol | SYP31 (SYNTAXIN OF PLANTS 31) SNAP RECEPTOR |
| AT3G27310
| ExperimentalReconstituted Complexco-fractionationCo-fractionationAffinity Capture-Westerncoimmunoprecipitationin vitro | FSW = 0.0406
| Unknown | PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1) |
| AT4G15410
| ExperimentalReconstituted Complexin vitro | FSW = 0.0217
| Unknown | PUX5 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN PHOSPHATASE 2A 55 KDA REGULATORY SUBUNIT B PRIME GAMMA) PROTEIN BINDING |
| AT2G38280
| Experimentalco-fractionationCo-fractionation | FSW = 0.0174
| Unknown | FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE |
| AT2G01650
| Experimentalinferred by author | FSW = 0.0196
| Unknown | PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT4G04210
| Experimentalinferred by author | FSW = 0.0903
| Unknown | PUX4 PROTEIN BINDING |
| AT4G22150
| Experimentalinferred by author | FSW = 0.0690
| Unknown | PUX3 PROTEIN BINDING |
| AT3G53230
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2023
| Class C:plasma membranenucleusendoplasmic reticulum | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
| AT2G04390
| PredictedAffinity Capture-MS | FSW = 0.0150
| Class C:plasma membranenucleus | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
| AT1G43670
| PredictedAffinity Capture-MS | FSW = 0.0887
| Class C:plasma membranecytosol | FRUCTOSE-16-BISPHOSPHATASE PUTATIVE / D-FRUCTOSE-16-BISPHOSPHATE 1-PHOSPHOHYDROLASE PUTATIVE / FBPASE PUTATIVE |
| AT3G22630
| PredictedAffinity Capture-MS | FSW = 0.0153
| Class C:plasma membrane | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G23410 | Predictedtwo hybrid | FSW = 0.0479
| Class C:plasma membrane | UBIQUITIN EXTENSION PROTEIN PUTATIVE / 40S RIBOSOMAL PROTEIN S27A (RPS27AA) |
| AT1G65040
| PredictedAffinity Capture-MS | FSW = 0.0139
| Class C:plasma membrane | PROTEIN BINDING / ZINC ION BINDING |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.0210
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT3G21700
| PredictedAffinity Capture-MS | FSW = 0.0171
| Class C:nucleus | SGP2 GTP BINDING |
| AT1G51740
| PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0205
| Class C:endoplasmic reticulum | SYP81 (SYNTAXIN OF PLANTS 81) SNAP RECEPTOR/ PROTEIN BINDING |
| AT1G31780
| PredictedAffinity Capture-MS | FSW = 0.0068
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
| AT2G29080
| PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0274
| Unknown | FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE |
| AT5G58470
| Predictedtwo hybrid | FSW = 0.0183
| Unknown | TAF15B (TBP-ASSOCIATED FACTOR 15B) BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
| AT5G03340
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4910
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
| AT2G03670
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0703
| Unknown | CDC48B ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G11710
| PredictedAffinity Capture-MS | FSW = 0.0383
| Unknown | ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT4G17620
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0309
| Unknown | GLYCINE-RICH PROTEIN |
| AT1G16190
| PredictedAffinity Capture-Western | FSW = 0.0269
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
| AT4G26840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0052
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT5G15400
| PredictedAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.1852
| Unknown | U-BOX DOMAIN-CONTAINING PROTEIN |
| AT3G60240
| PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
| AT3G18860
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0525
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G21270
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Lethality | FSW = 0.0635
| Unknown | UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN |
| AT1G50670
| PredictedAffinity Capture-MS | FSW = 0.1920
| Unknown | OTU-LIKE CYSTEINE PROTEASE FAMILY PROTEIN |
| AT1G26665
| PredictedAffinity Capture-MS | FSW = 0.0547
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED (TAIRAT5G419101) HAS 223 BLAST HITS TO 223 PROTEINS IN 105 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 112 FUNGI - 83 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK) |
| AT1G14570
| PredictedAffinity Capture-MSAffinity Capture-Westerntwo hybridEnriched domain pairCo-expression | FSW = 0.1018
| Unknown | UBX DOMAIN-CONTAINING PROTEIN |
| AT1G01930
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0537
| Unknown | ZINC FINGER PROTEIN-RELATED |
| AT5G49510
| PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
| AT1G15810
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0451
| Unknown | RIBOSOMAL PROTEIN S15 FAMILY PROTEIN |
| AT1G26830
| PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G10790
| PredictedAffinity Capture-Westerntwo hybridEnriched domain pairCo-expression | FSW = 0.0547
| Unknown | UBX DOMAIN-CONTAINING PROTEIN |
| AT4G05320
| PredictedReconstituted Complextwo hybrid | FSW = 0.0427
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
| AT1G11290
| PredictedGene fusion method | FSW = 0.0463
| Unknown | CRR22 (CHLORORESPIRATORY REDUCTION22) ENDONUCLEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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