Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09880 - ( ATB BETA protein phosphatase type 2A regulator )

10 Proteins interacs with AT3G09880
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G25490

Experimental

two hybrid

Reconstituted Complex

FSW = 0.1381

Unknown

RCN1 (ROOTS CURL IN NPA) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G26030

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7613

Unknown

ATB DELTA PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT2G18390

Predicted

Co-purification

FSW = 0.0529

Unknown

TTN5 (TITAN 5) GTP BINDING / GTPASE
AT4G15415

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7794

Unknown

ATB GAMMA POLY(U) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G54930

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7244

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT1G13460

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5063

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT5G25510

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7613

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G26020

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2508

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G21650

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7613

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT5G03470

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5613

Unknown

ATB ALPHA PROTEIN PHOSPHATASE TYPE 2A REGULATOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454