Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G09900 - ( ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP binding )
73 Proteins interacs with AT3G09900| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G17530
   | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4954
| Class C:plasma membrane | ATRAB1C GTP BINDING |
| AT5G45750
| PredictedPhylogenetic profile method | FSW = 0.4600
| Class C:plasma membrane | ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING |
| AT4G19640
| PredictedPhylogenetic profile method | FSW = 0.2058
| Class C:plasma membrane | ARA7 GTP BINDING |
| AT1G02130
| PredictedSynthetic LethalityAffinity Capture-MSinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.5495
| Class C:plasma membrane | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT1G52280
| PredictedPhylogenetic profile method | FSW = 0.2661
| Class C:plasma membrane | ATRABG3D (ARABIDOPSIS RAB GTPASE HOMOLOG G3D) GTP BINDING |
| AT5G47520
| PredictedPhylogenetic profile method | FSW = 0.3562
| Class C:plasma membrane | ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING |
| AT3G46060
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5089
| Class C:plasma membrane | ATRAB8A GTP BINDING |
| AT4G17170
| PredictedPhylogenetic profile method | FSW = 0.3151
| Class C:plasma membrane | RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE |
| AT1G12360
| PredictedSynthetic Lethalityinterologs mapping | FSW = 0.1631
| Class C:plasma membrane | KEU (KEULE) PROTEIN TRANSPORTER |
| AT3G02520
| PredictedDosage Growth Defect | FSW = 0.0263
| Class C:plasma membrane | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT5G38480
| PredictedDosage Growth Defect | FSW = 0.0372
| Class C:plasma membrane | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G20090
| PredictedSynthetic Lethalityinterologs mappingSynthetic Lethality | FSW = 0.0183
| Class C:plasma membrane | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
| AT3G53610
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4830
| Class C:plasma membrane | ATRAB8 GTP BINDING |
| AT1G09630
| PredictedPhylogenetic profile method | FSW = 0.4066
| Class C:plasma membrane | ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING |
| AT4G35020
| PredictedSynthetic Lethalityinterologs mappingSynthetic Lethality | FSW = 0.0222
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
| AT5G12370
| PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.1196
| Class C:plasma membrane | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
| AT1G71820
| PredictedSynthetic Lethality | FSW = 0.1713
| Class C:plasma membrane | SEC6 |
| AT3G07410
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4225
| Class C:plasma membrane | ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING |
| AT1G28550
| PredictedGene fusion methodCo-expression | FSW = 0.4184
| Class C:plasma membrane | ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING |
| AT5G47200
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4789
| Class C:plasma membrane | ATRAB1A GTP BINDING |
| AT2G43130
| PredictedPhylogenetic profile method | FSW = 0.4520
| Class C:plasma membrane | ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT5G59840
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4246
| Class C:plasma membrane | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
| AT5G59150
| PredictedPhylogenetic profile method | FSW = 0.4666
| Class C:plasma membrane | ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING |
| AT4G39990
| PredictedPhylogenetic profile method | FSW = 0.4008
| Class C:plasma membrane | RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING |
| AT3G11730
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3205
| Class C:plasma membrane | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT1G43890
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4817
| Class C:plasma membrane | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING |
| AT1G20970 | Predictedinteraction predictionSynthetic LethalityReconstituted Complexinterologs mappingbiochemicalAffinity Capture-Westernbiochemicalinterologs mappingReconstituted ComplexSynthetic Lethalitytwo hybrid | FSW = 0.1896
| Class C:plasma membrane | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK) |
| AT1G73640
| PredictedPhylogenetic profile method | FSW = 0.4309
| Class C:plasma membrane | ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING |
| AT1G22740
| PredictedPhylogenetic profile method | FSW = 0.3518
| Unknown | RABG3B GTP BINDING |
| AT4G09720
| PredictedPhylogenetic profile method | FSW = 0.2268
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
| AT1G55190
| Predictedtwo hybridAffinity Capture-Western | FSW = 0.0892
| Unknown | PRA7 |
| AT2G30710
| Predictedbiochemical | FSW = 0.0411
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT4G35860
| PredictedPhylogenetic profile method | FSW = 0.3885
| Unknown | ATGB2 (GTP-BINDING 2) GTP BINDING |
| AT5G43900
| Predictedinteraction prediction | FSW = 0.0425
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
| AT1G01200
| PredictedPhylogenetic profile method | FSW = 0.4678
| Unknown | ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING |
| AT2G22290
| PredictedPhylogenetic profile method | FSW = 0.2714
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
| AT5G03520
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5550
| Unknown | ATRAB8C GTP BINDING |
| AT1G04260
| PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1259
| Unknown | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
| AT3G24350
| PredictedCo-purification | FSW = 0.0432
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
| AT3G54840
| PredictedPhylogenetic profile method | FSW = 0.1308
| Unknown | ARA6 GTP BINDING / GTPASE |
| AT3G59500
| Predictedtwo hybridReconstituted Complextwo hybridinteraction prediction | FSW = 0.0896
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
| AT3G05710
| PredictedCo-purification | FSW = 0.0214
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
| AT3G06540
| PredictedAffinity Capture-WesternEnriched domain pairCo-expression | FSW = 0.0818
| Unknown | GDP DISSOCIATION INHIBITOR FAMILY PROTEIN / RAB GTPASE ACTIVATOR FAMILY PROTEIN |
| AT3G02580
| PredictedSynthetic Lethality | FSW = 0.0195
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
| AT5G50720
| PredictedAffinity Capture-Western | FSW = 0.0275
| Unknown | ATHVA22E |
| AT1G69700
| PredictedAffinity Capture-WesternCo-expression | FSW = 0.0783
| Unknown | ATHVA22C |
| AT2G19770
| Predictedinteraction prediction | FSW = 0.0581
| Unknown | PRF5 (PROFILIN5) ACTIN BINDING / ACTIN MONOMER BINDING |
| AT1G04160
| PredictedSynthetic LethalityAffinity Capture-WesternSynthetic LethalitySynthetic Lethality | FSW = 0.0730
| Unknown | XIB (MYOSIN XI B) MOTOR |
| AT1G21170 | Predictedinterologs mappingSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.1595
| Unknown | SEC5B |
| AT2G36300
| Predictedtwo hybridSynthetic Lethality | FSW = 0.1556
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
| AT1G17140
| PredictedPhenotypic Suppression | FSW = 0.0265
| Unknown | TROPOMYOSIN-RELATED |
| AT3G07890
| Predictedbiochemical | FSW = 0.0312
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT3G56640
| Predictedtwo hybridSynthetic LethalitySynthetic Lethalityinterologs mappingco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternSynthetic Lethalitytwo hybridco-fractionationCo-fractionationinterologs mappingSynthetic Lethalityinteraction prediction | FSW = 0.1755
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
| AT5G09350
| PredictedSynthetic LethalityEnriched domain pair | FSW = 0.1782
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
| AT5G09550
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-Westerntwo hybridSynthetic Lethalityinteraction predictionEnriched domain pairCo-expression | FSW = 0.2025
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
| AT5G13150
| Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.0563
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
| AT5G13680
| PredictedSynthetic RescueCo-expression | FSW = 0.0077
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
| AT5G54750
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0781
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
| AT2G44100
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-WesternSynthetic Lethalitytwo hybridEnriched domain pairCo-expression | FSW = 0.1674
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
| AT1G02010
| PredictedSynthetic Lethalityinterologs mapping | FSW = 0.1190
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
| AT1G54090
| Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.1055
| Unknown | ATEXO70D2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D2) PROTEIN BINDING |
| AT2G18840
| PredictedReconstituted Complex | FSW = 0.1152
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
| AT1G30890
| Predictedtwo hybridReconstituted Complextwo hybrid | FSW = 0.2165
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
| AT3G43740
| PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.1151
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
| AT5G03530
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5153
| Unknown | RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
| AT2G33030
| PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0654
| Unknown | ATRLP25 (RECEPTOR LIKE PROTEIN 25) PROTEIN BINDING |
| AT4G17160
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4414
| Unknown | ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING |
| AT3G09910
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5811
| Unknown | ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING |
| AT5G21090
| PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.1266
| Unknown | LEUCINE-RICH REPEAT PROTEIN PUTATIVE |
| AT5G39620
| PredictedPhylogenetic profile method | FSW = 0.2809
| Unknown | ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING |
| AT5G55080
| PredictedPhylogenetic profile method | FSW = 0.2322
| Unknown | ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT4G39890
| PredictedPhylogenetic profile method | FSW = 0.3304
| Unknown | ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING |
| AT2G31680
| PredictedPhylogenetic profile method | FSW = 0.4242
| Unknown | ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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