Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G10050 - ( OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-threonine ammonia-lyase )
37 Proteins interacs with AT3G10050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0176
| Class C:plastid | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0302
| Class C:plastid | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07510 | PredictedPhenotypic Suppression | FSW = 0.0544
| Class C:plastid | FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING |
AT2G29080 | PredictedPhenotypic Suppression | FSW = 0.0525
| Class C:plastid | FTSH3 (FTSH PROTEASE 3) ATP-DEPENDENT PEPTIDASE/ ATPASE |
AT5G56730 | Predictedpull down | FSW = 0.0220
| Class C:plastid | PEPTIDASE M16 FAMILY PROTEIN / INSULINASE FAMILY PROTEIN |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0792
| Class C:plastid | DNA HELICASE PUTATIVE |
AT3G58610 | PredictedAffinity Capture-MS | FSW = 0.0085
| Class C:plastid | KETOL-ACID REDUCTOISOMERASE |
AT2G04270 | Predictedpull down | FSW = 0.0237
| Class C:plastid | RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0976
| Class C:plastid | DNA HELICASE-RELATED |
ATCG00180 | Predictedpull down | FSW = 0.0375
| Class C:plastid | RNA POLYMERASE BETA SUBUNIT-1 |
ATCG00800 | Predictedpull down | FSW = 0.0242
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G04120 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G56070 | PredictedAffinity Capture-MS | FSW = 0.1082
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT1G69620 | Predictedtwo hybrid | FSW = 0.0878
| Unknown | RPL34 (RIBOSOMAL PROTEIN L34) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G23990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0605
| Unknown | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT2G26140 | PredictedPhenotypic Suppression | FSW = 0.1292
| Unknown | FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE |
AT5G56030 | PredictedAffinity Capture-MS | FSW = 0.0501
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0329
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G52640 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.0260
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G50360 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | ATCEN2 (CENTRIN2) CALCIUM ION BINDING |
AT1G57720 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1325
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G09640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0375
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT3G44530 | PredictedPhenotypic Enhancement | FSW = 0.0120
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G55750 | Predictedinteraction predictiontwo hybrid | FSW = 0.0070
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT2G27470 | PredictedPhenotypic Enhancement | FSW = 0.0183
| Unknown | NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR |
AT3G03600 | Predictedinteraction predictiontwo hybrid | FSW = 0.0225
| Unknown | RPS2 (RIBOSOMAL PROTEIN S2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G26710 | PredictedAffinity Capture-MS | FSW = 0.1031
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT1G79750 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1142
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT5G20850 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0403
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G53310 | Predictedpull down | FSW = 0.0500
| Unknown | ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1) CATALYTIC/ PHOSPHOENOLPYRUVATE CARBOXYLASE |
AT1G08880 | PredictedPhenotypic Enhancement | FSW = 0.0039
| Unknown | H2AXA DNA BINDING |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.1436
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G02020 | PredictedSynthetic RescueGene neighbors method | FSW = 0.0269
| Unknown | AK3 (ASPARTATE KINASE 3) ASPARTATE KINASE |
AT1G16280 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0481
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G04940 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0250
| Unknown | CYSD1 (CYSTEINE SYNTHASE D1) CYSTEINE SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454