Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G10610 - ( 40S ribosomal protein S17 (RPS17C) )

18 Proteins interacs with AT3G10610
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G51980

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Co-purification

Co-purification

interologs mapping

FSW = 0.2193

Unknown

MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT PUTATIVE
AT5G02500

Predicted

Co-purification

FSW = 0.0162

Unknown

HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.0127

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G08710

Predicted

Affinity Capture-MS

FSW = 0.0129

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT1G54270

Predicted

Affinity Capture-MS

FSW = 0.0174

Unknown

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT1G32470

Predicted

Affinity Capture-MS

FSW = 0.0305

Unknown

GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE
AT1G64190

Predicted

Affinity Capture-MS

FSW = 0.0119

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT5G23740

Predicted

Affinity Capture-MS

FSW = 0.0190

Unknown

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G04390

Predicted

Phylogenetic profile method

FSW = 0.0535

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT1G79450

Predicted

Affinity Capture-MS

FSW = 0.1516

Unknown

ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT1G74130

Predicted

Phenotypic Enhancement

FSW = 0.1524

Unknown

RHOMBOID FAMILY PROTEIN
AT1G20696

Predicted

Affinity Capture-MS

FSW = 0.0152

Unknown

HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT4G33200

Predicted

Phenotypic Enhancement

FSW = 0.0246

Unknown

XI-I MOTOR/ PROTEIN BINDING
AT5G15240

Predicted

Affinity Capture-MS

FSW = 0.0409

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G50130

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.2193

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT5G57240

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.2297

Unknown

ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) OXYSTEROL BINDING
AT2G05220

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.1341

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17B)
AT5G04800

Predicted

Phylogenetic profile method

FSW = 0.0484

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17D)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454