Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G10690 - ( DNA gyrase subunit A family protein )

19 Proteins interacs with AT3G10690
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G10270Experimental

two hybrid

FSW = 0.2236

Class A:

mitochondrion

Class B:

plastid

Class D:

mitochondrion (p = 0.82)

 ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)
AT3G21350

Experimental

FSW = 0.0140

Unknown

 RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED
AT5G23140

Predicted

pull down

FSW = 0.1578

Class C:

plastid

mitochondrion

 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT3G48110

Predicted

pull down

FSW = 0.0726

Class C:

plastid

mitochondrion

 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) GLYCINE-TRNA LIGASE
AT2G33800

Predicted

pull down

FSW = 0.1299

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT1G79050

Predicted

pull down

FSW = 0.3077

Class C:

plastid

 DNA REPAIR PROTEIN RECA
AT2G22360

Predicted

pull down

FSW = 0.2108

Class C:

plastid

 DNAJ HEAT SHOCK FAMILY PROTEIN
AT4G26300

Predicted

pull down

FSW = 0.0455

Class C:

plastid

 EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT5G55280

Predicted

pull down

FSW = 0.2689

Class C:

plastid

 FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE
AT5G03940

Predicted

pull down

FSW = 0.1787

Class C:

plastid

 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING
ATCG00160Predicted

pull down

FSW = 0.1280

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
AT4G37910

Predicted

pull down

FSW = 0.0822

Class C:

mitochondrion

 MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT4G11060

Predicted

pull down

FSW = 0.0860

Class C:

mitochondrion

 MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN) SINGLE-STRANDED DNA BINDING
AT4G02930

Predicted

pull down

FSW = 0.2251

Class C:

mitochondrion

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT5G04130

Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.4180

Class C:

mitochondrion

 DNA TOPOISOMERASE ATP-HYDROLYZING PUTATIVE / DNA TOPOISOMERASE II PUTATIVE / DNA GYRASE PUTATIVE
AT5G19550

Predicted

pull down

FSW = 0.0482

Unknown

 ASP2 (ASPARTATE AMINOTRANSFERASE 2) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE
AT2G36880

Predicted

pull down

FSW = 0.3175

Unknown

 MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT1G79500

Predicted

pull down

FSW = 0.1385

Unknown

 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT4G04880

Predicted

pull down

FSW = 0.1569

Unknown

 ADENOSINE/AMP DEAMINASE FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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