Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G10730 - ( sad1/unc-84-like 2 family protein )

12 Proteins interacs with AT3G10730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G04990

Experimental

fluorescence acceptor donor pair

fluorescence acceptor donor pair

FSW = 0.0333

Class A:

nucleus

endoplasmic reticulum

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

SAD1/UNC-84 PROTEIN-RELATED
AT1G03080

Predicted

Colocalization

FSW = 0.2133

Class C:

nucleus

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PREFOLDIN (INTERPROIPR009053) KIP1-LIKE (INTERPROIPR011684) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS KINASE INTERACTING FAMILY PROTEIN (TAIRAT3G227901) HAS 169162 BLAST HITS TO 69460 PROTEINS IN 2232 SPECIES ARCHAE - 2114 BACTERIA - 24914 METAZOA - 82448 FUNGI - 11850 PLANTS - 6375 VIRUSES - 760 OTHER EUKARYOTES - 40701 (SOURCE NCBI BLINK)
AT5G54840

Predicted

Colocalization

FSW = 0.0205

Class C:

nucleus

SGP1 GTP BINDING
AT2G37990

Predicted

two hybrid

FSW = 0.0441

Class C:

nucleus

RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN
AT4G19640

Predicted

Affinity Capture-MS

FSW = 0.0125

Class C:

endoplasmic reticulum

ARA7 GTP BINDING
AT5G45160

Predicted

two hybrid

FSW = 0.0462

Class C:

endoplasmic reticulum

ROOT HAIR DEFECTIVE 3 GTP-BINDING (RHD3) FAMILY PROTEIN
AT3G13530

Predicted

Colocalization

FSW = 0.1015

Unknown

MAPKKK7 ATP BINDING / BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G36160

Predicted

two hybrid

FSW = 0.0561

Unknown

ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE
AT3G50360

Predicted

synthetic growth defect

interologs mapping

FSW = 0.0184

Unknown

ATCEN2 (CENTRIN2) CALCIUM ION BINDING
AT3G22660

Predicted

two hybrid

FSW = 0.0479

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT1G60780

Predicted

two hybrid

FSW = 0.0260

Unknown

HAP13 (HAPLESS 13) PROTEIN BINDING
AT4G22960

Predicted

two hybrid

FSW = 0.0443

Unknown

UNKNOWN PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454