Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G10910 - ( zinc finger (C3HC4-type RING finger) family protein )

12 Proteins interacs with AT3G10910
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G43160

Predicted

Affinity Capture-MS

FSW = 0.0726

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT3G09790

Predicted

Affinity Capture-MS

two hybrid

FSW = 0.0762

Unknown

UBQ8 PROTEIN BINDING
AT4G02890Predicted

Affinity Capture-MS

FSW = 0.0900

Unknown

UBQ14 PROTEIN BINDING
AT1G64230

Predicted

Affinity Capture-MS

FSW = 0.0388

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G21630

Predicted

two hybrid

FSW = 0.0978

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT2G47110Predicted

Affinity Capture-MS

two hybrid

FSW = 0.0344

Unknown

UBQ6 PROTEIN BINDING
AT1G15130

Predicted

Affinity Capture-MS

FSW = 0.0508

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT1G25350

Predicted

Affinity Capture-MS

FSW = 0.0711

Unknown

OVA9 (OVULE ABORTION 9) GLUTAMINE-TRNA LIGASE
AT3G20630

Predicted

Affinity Capture-MS

FSW = 0.0410

Unknown

UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE
AT4G05050Predicted

Affinity Capture-MS

FSW = 0.1062

Unknown

UBQ11 (UBIQUITIN 11) PROTEIN BINDING
AT4G16144

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0585

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S MOV34/MPN/PAD-1 (INTERPROIPR000555) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MOV34 FAMILY PROTEIN (TAIRAT1G487901) HAS 622 BLAST HITS TO 459 PROTEINS IN 132 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 326 FUNGI - 156 PLANTS - 82 VIRUSES - 0 OTHER EUKARYOTES - 58 (SOURCE NCBI BLINK)
AT4G27960

Predicted

Affinity Capture-MS

Enriched domain pair

FSW = 0.0395

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454