Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11130 - ( clathrin heavy chain putative )
17 Proteins interacs with AT3G11130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G05020 | Experimentaltwo hybrid | FSW = 0.0381
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT3G08530 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1605
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
AT5G35200 | Predictedin vitroin vivo | FSW = 0.0381
| Class C:plasma membrane | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT4G11380 | Predictedin vitro | FSW = 0.0570
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
AT3G52150 | Predictedtwo hybrid | FSW = 0.0418
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G12480 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0441
| Unknown | CHC1 |
AT1G71300 | Predictedtwo hybrid | FSW = 0.0533
| Unknown | VPS52/SAC2 FAMILY PROTEIN |
AT4G15930 | Predictedtwo hybrid | FSW = 0.0229
| Unknown | MICROTUBULE MOTOR |
AT4G36690 | Predictedtwo hybrid | FSW = 0.0612
| Unknown | ATU2AF65A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G07790 | Predictedtwo hybrid | FSW = 0.1318
| Unknown | DGCR14-RELATED |
AT1G30280 | PredictedReconstituted Complex | FSW = 0.2000
| Unknown | HEAT SHOCK PROTEIN BINDING |
AT1G60070 | Predictedin vitro | FSW = 0.1976
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G26210 | Predictedtwo hybrid | FSW = 0.0659
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT5G57610 | Predictedin vitro | FSW = 0.0902
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G55480 | Predictedin vitro | FSW = 0.0686
| Unknown | ADAPTIN FAMILY PROTEIN |
AT5G57200 | Predictedin vitroin vivo | FSW = 0.0933
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454