Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11400 - ( eukaryotic translation initiation factor 3G / eIF3g )

37 Proteins interacs with AT3G11400
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.0992

Class C:

plasma membrane

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770

Predicted

Affinity Capture-MS

FSW = 0.1470

Class C:

plasma membrane

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.1093

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G52140Predicted

two hybrid

Reconstituted Complex

FSW = 0.0093

Class C:

plasma membrane

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT3G58510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1440

Class C:

plasma membrane

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT2G04390

Predicted

Affinity Capture-MS

FSW = 0.0792

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT1G76810Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1800

Class C:

plasma membrane

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G25740

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0138

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S10 (RPS10A)
AT4G11420

Predicted

Co-purification

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Affinity Capture-MS

co-fractionation

Co-fractionation

interaction prediction

Co-expression

FSW = 0.3690

Class C:

plasma membrane

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT3G57290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1405

Class C:

plasma membrane

EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR
AT5G25780

Predicted

interaction prediction

two hybrid

Reconstituted Complex

Reconstituted Complex

Co-purification

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

two hybrid

Co-purification

co-fractionation

Co-fractionation

interologs mapping

interaction prediction

FSW = 0.3935

Unknown

EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT1G01080

Predicted

Gene fusion method

FSW = 0.0454

Unknown

33 KDA RIBONUCLEOPROTEIN CHLOROPLAST PUTATIVE / RNA-BINDING PROTEIN CP33 PUTATIVE
AT2G42520

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0711

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G77840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3466

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT2G44680

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0343

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT3G10330

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0752

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT2G41630

Predicted

Affinity Capture-MS

FSW = 0.0687

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT5G59240

Predicted

Affinity Capture-MS

FSW = 0.2094

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT5G52650

Predicted

Affinity Capture-MS

FSW = 0.0492

Unknown

40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT4G30800

Predicted

Affinity Capture-MS

FSW = 0.1011

Unknown

40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT1G04170

Predicted

co-fractionation

Co-fractionation

Affinity Capture-MS

co-fractionation

Co-fractionation

Affinity Capture-MS

Co-expression

FSW = 0.1978

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G54290

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0733

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G46280

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Reconstituted Complex

interologs mapping

co-fractionation

Co-fractionation

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-fractionation

two hybrid

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

co-fractionation

Co-fractionation

Affinity Capture-Western

interologs mapping

interaction prediction

FSW = 0.3854

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G79990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0173

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT3G05090

Predicted

Affinity Capture-MS

FSW = 0.1364

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G56150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4745

Unknown

EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT4G19210

Predicted

Affinity Capture-MS

FSW = 0.2451

Unknown

ATRLI2 TRANSPORTER
AT5G15770

Predicted

interaction prediction

two hybrid

FSW = 0.0237

Unknown

ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
AT2G46290

Predicted

Affinity Capture-Western

FSW = 0.1057

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE
AT3G22860

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4021

Unknown

TIF3C2 TRANSLATION INITIATION FACTOR
AT1G52360

Predicted

Affinity Capture-MS

FSW = 0.0195

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G36730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3208

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT1G21160

Predicted

Affinity Capture-MS

FSW = 0.1391

Unknown

GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR
AT3G13640

Predicted

Affinity Capture-MS

FSW = 0.1320

Unknown

ATRLI1 TRANSPORTER
AT5G42950

Predicted

two hybrid

FSW = 0.0552

Unknown

GYF DOMAIN-CONTAINING PROTEIN
AT5G06000

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2074

Unknown

EIF3G2 RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G65350

Predicted

Gene fusion method

FSW = 0.0516

Unknown

UBQ13 PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454