Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11400 - ( eukaryotic translation initiation factor 3G / eIF3g )
37 Proteins interacs with AT3G11400| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G37270
   | PredictedAffinity Capture-MS | FSW = 0.0992
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.1470
| Class C:plasma membrane | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.1093
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT3G52140 | Predictedtwo hybridReconstituted Complex | FSW = 0.0093
| Class C:plasma membrane | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
| AT3G58510
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1440
| Class C:plasma membrane | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT2G04390
| PredictedAffinity Capture-MS | FSW = 0.0792
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
| AT1G76810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1800
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
| AT4G25740
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0138
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S10 (RPS10A) |
| AT4G11420
| PredictedCo-purificationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationAffinity Capture-MSco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.3690
| Class C:plasma membrane | EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR |
| AT3G57290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1405
| Class C:plasma membrane | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) TRANSLATION INITIATION FACTOR |
| AT5G25780
| Predictedinteraction predictiontwo hybridReconstituted ComplexReconstituted ComplexCo-purificationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridCo-purificationco-fractionationCo-fractionationinterologs mappinginteraction prediction | FSW = 0.3935
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT1G01080
| PredictedGene fusion method | FSW = 0.0454
| Unknown | 33 KDA RIBONUCLEOPROTEIN CHLOROPLAST PUTATIVE / RNA-BINDING PROTEIN CP33 PUTATIVE |
| AT2G42520
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0711
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G77840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3466
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
| AT2G44680
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0343
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
| AT3G10330
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0752
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
| AT2G41630
| PredictedAffinity Capture-MS | FSW = 0.0687
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
| AT5G59240
| PredictedAffinity Capture-MS | FSW = 0.2094
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
| AT5G52650
| PredictedAffinity Capture-MS | FSW = 0.0492
| Unknown | 40S RIBOSOMAL PROTEIN S10 (RPS10C) |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.1011
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT1G04170
| Predictedco-fractionationCo-fractionationAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MSCo-expression | FSW = 0.1978
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT1G54290
| PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0733
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT2G46280
| Predictedinteraction predictiontwo hybridtwo hybridtwo hybridReconstituted Complexinterologs mappingco-fractionationCo-fractionationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-fractionationtwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionationAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.3854
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G79990
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0173
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
| AT3G05090
| PredictedAffinity Capture-MS | FSW = 0.1364
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT3G56150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4745
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
| AT4G19210
| PredictedAffinity Capture-MS | FSW = 0.2451
| Unknown | ATRLI2 TRANSPORTER |
| AT5G15770
| Predictedinteraction predictiontwo hybrid | FSW = 0.0237
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
| AT2G46290
| PredictedAffinity Capture-Western | FSW = 0.1057
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 2 PUTATIVE / EIF-3 BETA PUTATIVE / EIF3I PUTATIVE |
| AT3G22860
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4021
| Unknown | TIF3C2 TRANSLATION INITIATION FACTOR |
| AT1G52360
| PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
| AT1G36730
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3208
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
| AT1G21160
| PredictedAffinity Capture-MS | FSW = 0.1391
| Unknown | GTP BINDING / GTPASE/ TRANSLATION INITIATION FACTOR |
| AT3G13640
| PredictedAffinity Capture-MS | FSW = 0.1320
| Unknown | ATRLI1 TRANSPORTER |
| AT5G42950
| Predictedtwo hybrid | FSW = 0.0552
| Unknown | GYF DOMAIN-CONTAINING PROTEIN |
| AT5G06000
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2074
| Unknown | EIF3G2 RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT1G65350
| PredictedGene fusion method | FSW = 0.0516
| Unknown | UBQ13 PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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