Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11710 - ( ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding )
16 Proteins interacs with AT3G11710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13490 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0743
| Unknown | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G09840 | PredictedAffinity Capture-MS | FSW = 0.0383
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT1G19120 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0134
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G18340 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0351
| Unknown | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT5G03340 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0375
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT4G13780 | Predictedin vitro | FSW = 0.0720
| Unknown | METHIONINE--TRNA LIGASE PUTATIVE / METHIONYL-TRNA SYNTHETASE PUTATIVE / METRS PUTATIVE |
AT1G71790 | Predictedtwo hybridtwo hybrid | FSW = 0.0277
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT1G48970 | PredictedSynthetic Lethality | FSW = 0.1793
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT2G34970 | PredictedSynthetic Lethality | FSW = 0.0783
| Unknown | EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN |
AT2G37840 | Predictedbiochemical | FSW = 0.0112
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G25230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0168
| Unknown | ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G59410 | PredictedSynthetic RescuePhenotypic Enhancement | FSW = 0.0215
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G03430 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0285
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0046
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G28340 | PredictedGene fusion method | FSW = 0.0896
| Unknown | ATRLP4 (RECEPTOR LIKE PROTEIN 4) PROTEIN BINDING |
AT2G17525 | PredictedGene fusion method | FSW = 0.0896
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454