Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11900 - ( ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) amino acid transmembrane transporter/ aromatic amino acid transmembrane transporter/ neutral amino acid transmembrane transporter )

53 Proteins interacs with AT3G11900
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01250

Predicted

Affinity Capture-MS

FSW = 0.2028

Unknown

60S RIBOSOMAL PROTEIN L7 (RPL7B)
AT3G12580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0875

Unknown

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G29990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4569

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT5G24400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3634

Unknown

EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT4G26970

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5322

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G51040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2376

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT4G23430

Predicted

Affinity Capture-MS

FSW = 0.4316

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G75840

Predicted

Affinity Capture-MS

FSW = 0.3739

Unknown

ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE
AT1G27970

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3556

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT2G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5189

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.2286

Unknown

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT5G62300

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3056

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT1G22300

Predicted

Affinity Capture-MS

FSW = 0.0829

Unknown

GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G22120

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.5188

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G36860

Predicted

Affinity Capture-MS

FSW = 0.1582

Unknown

ZINC ION BINDING
AT2G07640

Predicted

Affinity Capture-MS

FSW = 0.1147

Unknown

D2D4-DIENOYL-COA REDUCTASE-RELATED
AT4G29390Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0492

Unknown

40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.1588

Unknown

HISTONE H2B PUTATIVE
AT2G20510

Predicted

Affinity Capture-MS

FSW = 0.0058

Unknown

ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE
AT5G57625

Predicted

Affinity Capture-MS

FSW = 0.4444

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G33710

Predicted

Affinity Capture-MS

FSW = 0.2687

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G33720

Predicted

Affinity Capture-MS

FSW = 0.1096

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G08730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3070

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G16050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4213

Unknown

A37 PROTEIN HETERODIMERIZATION
AT1G24706

Predicted

Affinity Capture-MS

FSW = 0.3675

Unknown

UNKNOWN PROTEIN
AT1G64480

Predicted

Affinity Capture-MS

FSW = 0.2402

Unknown

CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.1152

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G01770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5774

Unknown

VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT2G03040

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2235

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G16740

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2132

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G17620

Predicted

Affinity Capture-MS

FSW = 0.2061

Unknown

CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G19910

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5391

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G34250

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2863

Unknown

PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT2G41530

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5491

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G43360

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5487

Unknown

BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G46860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3284

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.1333

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT2G47570

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3558

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT3G18850

Predicted

Affinity Capture-MS

FSW = 0.2975

Unknown

LPAT5 ACYLTRANSFERASE
AT3G49880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4580

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G51880

Predicted

Affinity Capture-MS

FSW = 0.4711

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G53730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5243

Unknown

HISTONE H4
AT3G59410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4213

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G26810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3983

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT5G13860

Predicted

Affinity Capture-MS

FSW = 0.0136

Unknown

ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G19150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.4171

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G19820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2756

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G27640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4926

Unknown

TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G06420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1875

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G17000

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3350

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G54200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1928

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT5G57890

Predicted

Affinity Capture-MS

FSW = 0.3756

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT2G42005

Predicted

Phylogenetic profile method

FSW = 0.0316

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454