Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11900 - ( ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) amino acid transmembrane transporter/ aromatic amino acid transmembrane transporter/ neutral amino acid transmembrane transporter )
53 Proteins interacs with AT3G11900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.2028
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0875
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4569
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G24400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3634
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5322
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G51040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2376
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.4316
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.3739
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3556
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5189
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.2286
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT5G62300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3056
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT1G22300 | PredictedAffinity Capture-MS | FSW = 0.0829
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.5188
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.1582
| Unknown | ZINC ION BINDING |
AT2G07640 | PredictedAffinity Capture-MS | FSW = 0.1147
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT4G29390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0492
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.1588
| Unknown | HISTONE H2B PUTATIVE |
AT2G20510 | PredictedAffinity Capture-MS | FSW = 0.0058
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.4444
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.2687
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G33720 | PredictedAffinity Capture-MS | FSW = 0.1096
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3070
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4213
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.3675
| Unknown | UNKNOWN PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.2402
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.1152
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G01770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5774
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2235
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2132
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.2061
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5391
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2863
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5491
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5487
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3284
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.1333
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3558
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.2975
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4580
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.4711
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5243
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4213
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3983
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G13860 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4171
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2756
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4926
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G06420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1875
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3350
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1928
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.3756
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT2G42005 | PredictedPhylogenetic profile method | FSW = 0.0316
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454