Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11910 - ( UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) ubiquitin thiolesterase/ ubiquitin-specific protease )
42 Proteins interacs with AT3G11910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20010 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G17290 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | ALAAT1 (ALANINE AMINOTRANSFERAS) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0350
| Unknown | DNA HELICASE PUTATIVE |
AT5G14590 | PredictedAffinity Capture-MS | FSW = 0.0435
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0128
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT1G54340 | PredictedAffinity Capture-MS | FSW = 0.0559
| Unknown | ICDH (ISOCITRATE DEHYDROGENASE) ISOCITRATE DEHYDROGENASE (NADP+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G12250 | PredictedAffinity Capture-MS | FSW = 0.0342
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G03920 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | PROTEIN KINASE PUTATIVE |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G16610 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | SR45 RNA BINDING / PROTEIN BINDING |
AT3G56990 | PredictedAffinity Capture-MS | FSW = 0.0191
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G03190 | PredictedPhenotypic Enhancement | FSW = 0.0134
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT3G12860 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
AT1G56110 | PredictedAffinity Capture-MS | FSW = 0.0311
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT4G22380 | PredictedAffinity Capture-MS | FSW = 0.0534
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT1G66620 | Predictedin vitroCo-expression | FSW = 0.0207
| Unknown | SEVEN IN ABSENTIA (SINA) PROTEIN PUTATIVE |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G17720 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G51710 | PredictedPhenotypic Suppression | FSW = 0.0498
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G59760 | PredictedAffinity Capture-MS | FSW = 0.0625
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
AT1G18090 | PredictedPhenotypic Enhancement | FSW = 0.0094
| Unknown | EXONUCLEASE PUTATIVE |
AT2G32600 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT4G11920 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G33080 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G22840 | Predictedbiochemical | FSW = 0.0206
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G35980 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.0128
| Unknown | CYCLIN FAMILY PROTEIN |
AT3G18860 | PredictedPhenotypic Suppression | FSW = 0.0284
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G20630 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE |
AT3G54380 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G08500 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT5G41700 | PredictedPhenotypic Suppression | FSW = 0.0097
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G43710 | PredictedAffinity Capture-MS | FSW = 0.0340
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT4G12600 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT1G09000 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE |
AT5G17270 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G37890 | Predictedin vitroCo-expression | FSW = 0.0323
| Unknown | SEVEN IN ABSENTIA (SINA) PROTEIN PUTATIVE |
AT5G37910 | Predictedin vitro | FSW = 0.0207
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT2G04660 | Predictedtwo hybridCo-expression | FSW = 0.0170
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G06600 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1135
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454