Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11940 - ( ATRPS5A (RIBOSOMAL PROTEIN 5A) structural constituent of ribosome )

15 Proteins interacs with AT3G11940
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G26970

Predicted

Affinity Capture-MS

FSW = 0.0333

Class C:

plastid

ACONITATE HYDRATASE/ COPPER ION BINDING
AT2G37270

Predicted

Gene fusion method

Phylogenetic profile method

FSW = 0.0225

Class C:

plasma membrane

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G62870

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.0205

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G26590

Predicted

biochemical

FSW = 0.0118

Unknown

MATE EFFLUX FAMILY PROTEIN
AT2G15430

Predicted

Synthetic Lethality

FSW = 0.0311

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G09230

Predicted

two hybrid

two hybrid

FSW = 0.1115

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G04710

Predicted

Affinity Capture-MS

FSW = 0.0253

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT2G27340

Predicted

Synthetic Lethality

FSW = 0.0835

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G24010

Predicted

Phenotypic Suppression

FSW = 0.0148

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G45590

Predicted

Affinity Capture-MS

FSW = 0.1032

Unknown

ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE
AT4G14240

Predicted

biochemical

FSW = 0.0108

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT5G19300

Predicted

Synthetic Lethality

FSW = 0.0574

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G66410

Predicted

Synthetic Lethality

FSW = 0.1184

Unknown

PLP3B (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING
AT3G25585

Predicted

Affinity Capture-MS

FSW = 0.1185

Unknown

AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT5G54750

Predicted

two hybrid

FSW = 0.0431

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454