Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12180 - ( cornichon family protein )
33 Proteins interacs with AT3G12180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G44610 | Predictedinteraction prediction | FSW = 0.0969
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.2467
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | PredictedPhenotypic Enhancement | FSW = 0.2596
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT4G04910 | PredictedPhenotypic Suppression | FSW = 0.1095
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G30710 | PredictedPhenotypic Enhancement | FSW = 0.2667
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.0735
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.2130
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.1937
| Unknown | SEC22 TRANSPORTER |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.1485
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT1G56330 | PredictedReconstituted Complex | FSW = 0.2032
| Unknown | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B) GTP BINDING |
AT2G17520 | PredictedPhenotypic Enhancement | FSW = 0.1410
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT1G02410 | Predictedtwo hybridinteraction prediction | FSW = 0.0748
| Unknown | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN CTAG / COX11 FAMILY |
AT3G24350 | PredictedCo-purification | FSW = 0.1793
| Unknown | SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR |
AT2G13650 | PredictedPhenotypic Enhancement | FSW = 0.0639
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT3G05710 | PredictedPhenotypic Enhancement | FSW = 0.2809
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G01020 | PredictedPhenotypic Enhancement | FSW = 0.1653
| Unknown | ARV1 |
AT1G01910 | PredictedPhenotypic Enhancement | FSW = 0.2475
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G05785 | PredictedPhenotypic Enhancement | FSW = 0.0976
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G16560 | PredictedPhenotypic Enhancement | FSW = 0.2816
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.2213
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G57620 | PredictedPhenotypic Enhancement | FSW = 0.1235
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G79990 | PredictedPhenotypic Enhancement | FSW = 0.2443
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT1G80500 | PredictedPhenotypic Enhancement | FSW = 0.1318
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT2G34770 | PredictedPhenotypic Suppression | FSW = 0.1819
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G14160 | Predictedsynthetic growth defect | FSW = 0.1603
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT4G17890 | PredictedPhenotypic Enhancement | FSW = 0.1752
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.1016
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G52210 | PredictedPhenotypic Enhancement | FSW = 0.1655
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT3G06670 | Predictedinteraction prediction | FSW = 0.0263
| Unknown | BINDING |
AT1G62880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0346
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G12340 | PredictedPhylogenetic profile method | FSW = 0.4954
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR SIGNALING CASCADE LOCATED IN MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S CORNICHON (INTERPROIPR003377) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CORNICHON FAMILY PROTEIN (TAIRAT1G123901) HAS 463 BLAST HITS TO 463 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 278 FUNGI - 110 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 34 (SOURCE NCBI BLINK) |
AT1G12390 | PredictedPhylogenetic profile method | FSW = 0.1282
| Unknown | CORNICHON FAMILY PROTEIN |
AT4G12090 | PredictedPhylogenetic profile method | FSW = 0.1709
| Unknown | CORNICHON FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454