Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12400 - ( ELC ubiquitin binding )
34 Proteins interacs with AT3G12400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G52590 | ExperimentalReconstituted Complex | FSW = 0.0189
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G36680 | Experimentaltwo hybridAffinity Capture-MS | FSW = 0.0721
| Unknown | LOCATED IN ESCRT I COMPLEX EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MODIFIER OF RUDIMENTARY MODR (INTERPROIPR009851) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS VPS37-1 (TAIRAT3G531201) HAS 39 BLAST HITS TO 39 PROTEINS IN 10 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 2 FUNGI - 0 PLANTS - 35 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT4G21560 | ExperimentalcoimmunoprecipitationAffinity Capture-MS | FSW = 0.1867
| Unknown | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) TRANSPORTER |
AT3G53120 | Experimentaltwo hybridcoimmunoprecipitation | FSW = 0.0566
| Unknown | VPS37-1 |
AT3G11630 | Predictedsynthetic growth defect | FSW = 0.0833
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G12520 | Predictedsynthetic growth defect | FSW = 0.1377
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0169
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G47210 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT3G19210 | Predictedsynthetic growth defect | FSW = 0.2040
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.1651
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | Predictedsynthetic growth defect | FSW = 0.1442
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT4G16420 | Predictedtwo hybrid | FSW = 0.0110
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.1867
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.1341
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT4G05000 | Predictedtwo hybridin vitroin vitroco-fractionationCo-fractionationAffinity Capture-MStwo hybridin vitroAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0527
| Unknown | VPS28-2 TRANSPORTER |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1886
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.1378
| Unknown | SGA2 |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.1249
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1924
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G23270 | Predictedtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.1351
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.1969
| Unknown | NUCLEOTIDE BINDING |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.1714
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0826
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.1731
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1152
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.1694
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.0614
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT4G05320 | PredictedAffinity Capture-Westerninteraction predictionEnriched domain pairCo-expression | FSW = 0.0395
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT5G22950 | PredictedSynthetic Rescue | FSW = 0.1351
| Unknown | VPS241 |
AT5G01760 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.1298
| Unknown | VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN |
AT1G79000 | Predictedin vitroin vivo | FSW = 0.0410
| Unknown | HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT5G61330 | Predictedin vitrotwo hybrid | FSW = 0.0094
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.1714
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT3G07740 | Predictedtwo hybrid | FSW = 0.0231
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454