Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12490 - ( cysteine protease inhibitor putative / cystatin putative )
35 Proteins interacs with AT3G12490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | Predictedinterologs mapping | FSW = 0.0434
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0306
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT2G37270 | PredictedSynthetic Lethality | FSW = 0.1032
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G36750 | Predictedinterologs mapping | FSW = 0.0308
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G45130 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0116
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G65540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1341
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G18870 | Predictedtwo hybrid | FSW = 0.0469
| Unknown | ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE |
AT5G03540 | PredictedSynthetic Rescue | FSW = 0.1232
| Unknown | ATEXO70A1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN A1) PROTEIN BINDING |
AT5G26340 | PredictedProtein-peptide | FSW = 0.0268
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G48130 | PredictedSynthetic RescueSynthetic RescuePhenotypic Suppression | FSW = 0.0577
| Unknown | ATPER1 ANTIOXIDANT/ THIOREDOXIN PEROXIDASE |
AT2G34450 | PredictedSynthetic Lethality | FSW = 0.1129
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedAffinity Capture-Westernco-fractionationCo-fractionationinterologs mapping | FSW = 0.0816
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G02680 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0714
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT2G17270 | PredictedAffinity Capture-MSAffinity Capture-WesternSynthetic LethalityAffinity Capture-MS | FSW = 0.1212
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G14580 | PredictedAffinity Capture-Western | FSW = 0.0445
| Unknown | ATPRB1 |
AT1G80710 | PredictedDosage Growth Defect | FSW = 0.0257
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G43190 | PredictedDosage Growth Defect | FSW = 0.0258
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT2G43790 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0291
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G15440 | Predictedtwo hybrid | FSW = 0.0112
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34340 | PredictedSynthetic Lethality | FSW = 0.2402
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G59580 | Predictedsynthetic growth defect | FSW = 0.0742
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G19160 | PredictedAffinity Capture-MS | FSW = 0.1060
| Unknown | UNKNOWN PROTEIN |
AT2G31060 | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT3G17630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.2899
| Unknown | ATCHX19 (CATION/H+ EXCHANGER 19) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT3G47120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1846
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G53880 | PredictedCo-purification | FSW = 0.0434
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G02120 | PredictedAffinity Capture-Western | FSW = 0.1688
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT5G46280 | PredictedSynthetic Lethality | FSW = 0.0602
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0041
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G36630 | Predictedinterologs mapping | FSW = 0.0508
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT4G38330 | Predictedinterologs mapping | FSW = 0.1060
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G05110 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1053
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454