Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G12720 - ( ATMYB67 (MYB DOMAIN PROTEIN 67) DNA binding / transcription factor )
11 Proteins interacs with AT3G12720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14640 | Experimentalprotein array | FSW = 0.0097
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT1G47210 | Predictedin vivo | FSW = 0.1233
| Class C:nucleus | CYCLIN FAMILY PROTEIN |
AT3G02940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1559
| Class C:nucleus | MYB107 (MYB DOMAIN PROTEIN 107) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G16770 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4440
| Class C:nucleus | ATMYB9 (MYB DOMAIN PROTEIN 9) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G34670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1559
| Class C:nucleus | ATMYB93 (MYB DOMAIN PROTEIN 93) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G02890 | PredictedAffinity Capture-MSin vivo | FSW = 0.0476
| Unknown | UBQ14 PROTEIN BINDING |
AT3G12280 | Predictedin vivoin vitroAffinity Capture-MSin vitroin vivo | FSW = 0.0132
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G43080 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.1200
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G16710 | Predictedin vitroin vivo | FSW = 0.0745
| Unknown | HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT1G79000 | Predictedin vivo | FSW = 0.0282
| Unknown | HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT2G31320 | Predictedin vivo | FSW = 0.0863
| Unknown | PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2) DNA BINDING / NAD OR NADH BINDING / NAD+ ADP-RIBOSYLTRANSFERASE/ ZINC ION BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454