Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12720 - ( ATMYB67 (MYB DOMAIN PROTEIN 67) DNA binding / transcription factor )

11 Proteins interacs with AT3G12720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14640

Experimental

protein array

FSW = 0.0097

Unknown

CAM8 (CALMODULIN 8) CALCIUM ION BINDING
AT1G47210

Predicted

in vivo

FSW = 0.1233

Class C:

nucleus

CYCLIN FAMILY PROTEIN
AT3G02940

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1559

Class C:

nucleus

MYB107 (MYB DOMAIN PROTEIN 107) DNA BINDING / TRANSCRIPTION FACTOR
AT5G16770

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4440

Class C:

nucleus

ATMYB9 (MYB DOMAIN PROTEIN 9) DNA BINDING / TRANSCRIPTION FACTOR
AT1G34670

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1559

Class C:

nucleus

ATMYB93 (MYB DOMAIN PROTEIN 93) DNA BINDING / TRANSCRIPTION FACTOR
AT4G02890Predicted

Affinity Capture-MS

in vivo

FSW = 0.0476

Unknown

UBQ14 PROTEIN BINDING
AT3G12280

Predicted

in vivo

in vitro

Affinity Capture-MS

in vitro

in vivo

FSW = 0.0132

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT5G43080

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.1200

Unknown

CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G16710

Predicted

in vitro

in vivo

FSW = 0.0745

Unknown

HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT1G79000

Predicted

in vivo

FSW = 0.0282

Unknown

HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT2G31320

Predicted

in vivo

FSW = 0.0863

Unknown

PARP2 (POLY(ADP-RIBOSE) POLYMERASE 2) DNA BINDING / NAD OR NADH BINDING / NAD+ ADP-RIBOSYLTRANSFERASE/ ZINC ION BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454