Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G12740 - ( ALIS1 (ALA-INTERACTING SUBUNIT 1) phospholipid transporter )

15 Proteins interacs with AT3G12740
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G59820

Experimental

Co-purification

FSW = 0.1023

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT1G16920

Predicted

interologs mapping

FSW = 0.1152

Unknown

ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT3G08530

Predicted

Synthetic Lethality

FSW = 0.0386

Unknown

CLATHRIN HEAVY CHAIN PUTATIVE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0091

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G79450

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1287

Unknown

ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT4G32760

Predicted

Synthetic Lethality

FSW = 0.1455

Unknown

PROTEIN TRANSPORTER
AT4G18430

Predicted

interologs mapping

FSW = 0.0821

Unknown

ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT3G02580

Predicted

Synthetic Lethality

FSW = 0.0762

Unknown

STE1 (STEROL 1) C-5 STEROL DESATURASE
AT1G02080Predicted

interologs mapping

FSW = 0.0364

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT1G54320

Predicted

interologs mapping

synthetic growth defect

Phylogenetic profile method

Co-expression

FSW = 0.2646

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT2G37550

Predicted

Synthetic Lethality

FSW = 0.0781

Unknown

AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT4G34490

Predicted

Synthetic Lethality

FSW = 0.0512

Unknown

ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1) ACTIN BINDING
AT5G10260

Predicted

Synthetic Lethality

FSW = 0.0309

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G46150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0421

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G16360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3232

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454