Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12760 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Defective in cullin neddylation (InterProIPR014764) Ubiquitin-associated/translation elongation factor EF1B N-terminal (InterProIPR000449) Protein of unknown function DUF298 (InterProIPR005176) UBA-like (InterProIPR009060) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G158602) Has 628 Blast hits to 626 proteins in 138 species Archae - 0 Bacteria - 0 Metazoa - 408 Fungi - 99 Plants - 64 Viruses - 0 Other Eukaryotes - 57 (source NCBI BLink) )

21 Proteins interacs with AT3G12760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G26590

Predicted

biochemical

FSW = 0.0042

Unknown

MATE EFFLUX FAMILY PROTEIN
AT2G33340

Predicted

Affinity Capture-MS

FSW = 0.0294

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0052

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G44290

Predicted

Reconstituted Complex

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0381

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G03330

Predicted

two hybrid

FSW = 0.0240

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT3G51300

Predicted

Affinity Capture-Western

FSW = 0.0115

Unknown

ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING
AT5G10330Predicted

Affinity Capture-MS

FSW = 0.0115

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT5G20570

Predicted

Reconstituted Complex

FSW = 0.0843

Unknown

RBX1 (RING-BOX 1) PROTEIN BINDING
AT1G22920

Predicted

Phenotypic Enhancement

FSW = 0.0267

Unknown

CSN5A (COP9 SIGNALOSOME 5A)
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0085

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G27350Predicted

two hybrid

FSW = 0.1108

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273301) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT2G18600

Predicted

Reconstituted Complex

FSW = 0.0290

Unknown

RUB1-CONJUGATING ENZYME PUTATIVE
AT2G32830

Predicted

Affinity Capture-MS

FSW = 0.0370

Unknown

PHT5 INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT2G47830

Predicted

Affinity Capture-MS

FSW = 0.1026

Unknown

CATION EFFLUX FAMILY PROTEIN / METAL TOLERANCE PROTEIN PUTATIVE (MTPC1)
AT4G05320

Predicted

Reconstituted Complex

FSW = 0.0167

Unknown

UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT4G21800

Predicted

Affinity Capture-MS

FSW = 0.0097

Unknown

QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING
AT4G24160

Predicted

Reconstituted Complex

Reconstituted Complex

FSW = 0.0145

Unknown

HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT4G26230

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0135

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT1G26830

Predicted

two hybrid

biochemical

Synthetic Lethality

two hybrid

FSW = 0.0232

Unknown

ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G27330

Predicted

two hybrid

FSW = 0.1440

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO OXIDATIVE STRESS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273501) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT1G15860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0315

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G127601) HAS 576 BLAST HITS TO 576 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 403 FUNGI - 78 PLANTS - 51 VIRUSES - 0 OTHER EUKARYOTES - 44 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454