Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12780 - ( PGK1 (PHOSPHOGLYCERATE KINASE 1) phosphoglycerate kinase )

30 Proteins interacs with AT3G12780
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G13440

Predicted

Affinity Capture-MS

FSW = 0.1664

Class C:

plastid

nucleus

mitochondrion

cytosol

GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT1G79550

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0914

Class C:

plastid

nucleus

PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE
AT1G74260

Predicted

two hybrid

FSW = 0.2579

Class C:

plastid

mitochondrion

PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE
AT1G56190

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3492

Class C:

plastid

mitochondrion

PHOSPHOGLYCERATE KINASE PUTATIVE
AT2G37690

Predicted

interaction prediction

FSW = 0.0677

Class C:

plastid

PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE
AT2G06510

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0165

Class C:

nucleus

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT2G43810

Predicted

Protein-RNA

FSW = 0.0655

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G54610

Predicted

Affinity Capture-MS

FSW = 0.0255

Class C:

nucleus

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT1G18270

Predicted

Affinity Capture-MS

FSW = 0.2162

Class C:

nucleus

KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN
AT1G19120

Predicted

Protein-RNA

FSW = 0.0692

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Protein-RNA

FSW = 0.0675

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G27720

Predicted

Protein-RNA

FSW = 0.0614

Class C:

nucleus

EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G03330

Predicted

Protein-RNA

FSW = 0.1227

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G76860

Predicted

Protein-RNA

FSW = 0.1492

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870

Predicted

Protein-RNA

FSW = 0.1132

Class C:

nucleus

SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0185

Class C:

cytosol

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G18140

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0118

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G23630

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0267

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G62020

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0617

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT3G25980

Predicted

Affinity Capture-MS

FSW = 0.0124

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT4G26840

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0312

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G48120

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.0391

Unknown

BINDING
AT5G13750

Predicted

two hybrid

FSW = 0.0566

Unknown

ZIFL1 (ZINC INDUCED FACILITATOR-LIKE 1) TETRACYCLINEHYDROGEN ANTIPORTER
AT1G79990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0312

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT1G10580

Predicted

Phenotypic Suppression

FSW = 0.0216

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G20080

Predicted

Affinity Capture-MS

FSW = 0.0373

Unknown

SYTB
AT1G29150

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0506

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT2G39840

Predicted

Affinity Capture-MS

FSW = 0.0107

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G38630

Predicted

Affinity Capture-MS

FSW = 0.0134

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G03220

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1052

Unknown

TRANSCRIPTIONAL CO-ACTIVATOR-RELATED

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454