Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G12780 - ( PGK1 (PHOSPHOGLYCERATE KINASE 1) phosphoglycerate kinase )
30 Proteins interacs with AT3G12780Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G13440 | PredictedAffinity Capture-MS | FSW = 0.1664
| Class C:plastidnucleusmitochondrioncytosol | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G79550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0914
| Class C:plastidnucleus | PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE |
AT1G74260 | Predictedtwo hybrid | FSW = 0.2579
| Class C:plastidmitochondrion | PUR4 (PURINE BIOSYNTHESIS 4) ATP BINDING / CATALYTIC/ PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE |
AT1G56190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3492
| Class C:plastidmitochondrion | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT2G37690 | Predictedinteraction prediction | FSW = 0.0677
| Class C:plastid | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE PUTATIVE / AIR CARBOXYLASE PUTATIVE |
AT2G06510 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0165
| Class C:nucleus | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT2G43810 | PredictedProtein-RNA | FSW = 0.0655
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G54610 | PredictedAffinity Capture-MS | FSW = 0.0255
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT1G18270 | PredictedAffinity Capture-MS | FSW = 0.2162
| Class C:nucleus | KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN |
AT1G19120 | PredictedProtein-RNA | FSW = 0.0692
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | PredictedProtein-RNA | FSW = 0.0675
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G27720 | PredictedProtein-RNA | FSW = 0.0614
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G03330 | PredictedProtein-RNA | FSW = 0.1227
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT1G76860 | PredictedProtein-RNA | FSW = 0.1492
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G48870 | PredictedProtein-RNA | FSW = 0.1132
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0185
| Class C:cytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G18140 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0118
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G23630 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0267
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G62020 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0617
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT3G25980 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0312
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G48120 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0391
| Unknown | BINDING |
AT5G13750 | Predictedtwo hybrid | FSW = 0.0566
| Unknown | ZIFL1 (ZINC INDUCED FACILITATOR-LIKE 1) TETRACYCLINEHYDROGEN ANTIPORTER |
AT1G79990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0312
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT1G10580 | PredictedPhenotypic Suppression | FSW = 0.0216
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G20080 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | SYTB |
AT1G29150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0506
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT2G39840 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G03220 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1052
| Unknown | TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454