Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13060 - ( ECT5 FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s YT521-B-like protein (InterProIPR007275) BEST Arabidopsis thaliana protein match is ECT2 protein binding (TAIRAT3G134601) Has 1007 Blast hits to 965 proteins in 147 species Archae - 0 Bacteria - 8 Metazoa - 528 Fungi - 103 Plants - 235 Viruses - 0 Other Eukaryotes - 133 (source NCBI BLink) )

26 Proteins interacs with AT3G13060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33120

Predicted

Affinity Capture-MS

FSW = 0.0156

Unknown

 SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

 ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G62870

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G06290

Predicted

biochemical

FSW = 0.0215

Unknown

 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT1G26160

Predicted

Affinity Capture-MS

FSW = 0.1091

Unknown

 METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT5G03650

Predicted

Affinity Capture-MS

FSW = 0.0235

Unknown

 SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT2G17420

Predicted

Affinity Capture-MS

FSW = 0.0387

Unknown

 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0577

Unknown

 CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G06960

Predicted

Affinity Capture-MS

FSW = 0.0292

Unknown

 SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT2G38230

Predicted

Affinity Capture-MS

FSW = 0.1091

Unknown

 ATPDX11 (PYRIDOXINE BIOSYNTHESIS 11) PROTEIN HETERODIMERIZATION
AT1G02100

Predicted

Affinity Capture-MS

FSW = 0.0455

Unknown

 LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G15440

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G23480

Predicted

Affinity Capture-MS

FSW = 0.1376

Unknown

 ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G60730

Predicted

Affinity Capture-MS

FSW = 0.0521

Unknown

 ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G20290

Predicted

Affinity Capture-MS

FSW = 0.0240

Unknown

 XIG MOTOR/ PROTEIN BINDING
AT2G24050

Predicted

Affinity Capture-MS

FSW = 0.0500

Unknown

 MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT2G34180

Predicted

Affinity Capture-MS

FSW = 0.0759

Unknown

 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G37925

Predicted

Affinity Capture-MS

FSW = 0.0522

Unknown

 COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT4G25150

Predicted

Affinity Capture-MS

FSW = 0.0184

Unknown

 ACID PHOSPHATASE PUTATIVE
AT5G13700

Predicted

two hybrid

FSW = 0.0826

Unknown

 ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1) FAD BINDING / POLYAMINE OXIDASE
AT5G26250

Predicted

Affinity Capture-MS

FSW = 0.0545

Unknown

 SUGAR TRANSPORTER PUTATIVE
AT5G54800

Predicted

Affinity Capture-MS

FSW = 0.0826

Unknown

 GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT5G66640

Predicted

biochemical

FSW = 0.0126

Unknown

 DAR3 (DA1-RELATED PROTEIN 3)
AT4G33070

Predicted

Affinity Capture-MS

FSW = 0.0197

Unknown

 PYRUVATE DECARBOXYLASE PUTATIVE
AT5G14070

Predicted

Affinity Capture-MS

FSW = 0.0368

Unknown

 ROXY2 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE
AT5G15070

Predicted

Affinity Capture-MS

FSW = 0.0066

Unknown

 ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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