Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13224 - ( RNA recognition motif (RRM)-containing protein )
19 Proteins interacs with AT3G13224Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G10630 | Predictedtwo hybrid | FSW = 0.0214
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT4G24770 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING |
AT1G48030 | Predictedtwo hybrid | FSW = 0.0331
| Unknown | MTLPD1 (MITOCHONDRIAL LIPOAMIDE DEHYDROGENASE 1) ATP BINDING / DIHYDROLIPOYL DEHYDROGENASE |
AT5G47010 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0333
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT2G19670 | Predictedbiochemicalbiochemicalbiochemical | FSW = 0.0921
| Unknown | PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE |
AT1G59940 | PredictedGene fusion method | FSW = 0.0462
| Unknown | ARR3 (RESPONSE REGULATOR 3) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G16950 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0408
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT5G27470 | PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | SERYL-TRNA SYNTHETASE / SERINE--TRNA LIGASE |
AT1G42440 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
AT1G10390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1429
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT5G40490 | PredictedAffinity Capture-WesternSynthetic Rescue | FSW = 0.0476
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G55300 | Predictedsynthetic growth defect | FSW = 0.0373
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT1G17760 | PredictedSynthetic Lethalitytwo hybrid | FSW = 0.0301
| Unknown | CSTF77 PROTEIN BINDING |
AT3G57350 | Predictedtwo hybrid | FSW = 0.0428
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT3G03110 | Predictedtwo hybrid | FSW = 0.0338
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT2G29350 | PredictedGene fusion method | FSW = 0.0182
| Unknown | SAG13 ALCOHOL DEHYDROGENASE/ OXIDOREDUCTASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454