Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13224 - ( RNA recognition motif (RRM)-containing protein )

19 Proteins interacs with AT3G13224
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G10630

Predicted

two hybrid

FSW = 0.0214

Unknown

ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.0208

Unknown

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT4G24770

Predicted

two hybrid

FSW = 0.0426

Unknown

RBP31 (31-KDA RNA BINDING PROTEIN) RNA BINDING / POLY(U) BINDING
AT1G48030

Predicted

two hybrid

FSW = 0.0331

Unknown

MTLPD1 (MITOCHONDRIAL LIPOAMIDE DEHYDROGENASE 1) ATP BINDING / DIHYDROLIPOYL DEHYDROGENASE
AT5G47010

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0333

Unknown

LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT2G19670

Predicted

biochemical

biochemical

biochemical

FSW = 0.0921

Unknown

PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT1G59940

Predicted

Gene fusion method

FSW = 0.0462

Unknown

ARR3 (RESPONSE REGULATOR 3) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0105

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G16950

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.0408

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT2G40010

Predicted

Affinity Capture-MS

FSW = 0.0261

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT5G27470

Predicted

Affinity Capture-MS

FSW = 0.0482

Unknown

SERYL-TRNA SYNTHETASE / SERINE--TRNA LIGASE
AT1G42440

Predicted

Affinity Capture-MS

FSW = 0.0261

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G10390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1429

Unknown

NUCLEOPORIN FAMILY PROTEIN
AT5G40490

Predicted

Affinity Capture-Western

Synthetic Rescue

FSW = 0.0476

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G55300

Predicted

synthetic growth defect

FSW = 0.0373

Unknown

TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I
AT1G17760

Predicted

Synthetic Lethality

two hybrid

FSW = 0.0301

Unknown

CSTF77 PROTEIN BINDING
AT3G57350

Predicted

two hybrid

FSW = 0.0428

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)
AT3G03110

Predicted

two hybrid

FSW = 0.0338

Unknown

XPO1B BINDING / PROTEIN TRANSPORTER
AT2G29350

Predicted

Gene fusion method

FSW = 0.0182

Unknown

SAG13 ALCOHOL DEHYDROGENASE/ OXIDOREDUCTASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454