Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13320 - ( CAX2 (CATION EXCHANGER 2) calciumcation antiporter/ calciumhydrogen antiporter )
20 Proteins interacs with AT3G13320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G43810 | Experimentalprotein array | FSW = 0.0116
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | Experimentalprotein array | FSW = 0.0130
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT5G39670 | Experimentalprotein array | FSW = 0.1672
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT2G41090 | Experimentalprotein array | FSW = 0.0152
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
AT5G63400 | Predictedbiochemical | FSW = 0.0123
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G15710 | PredictedPhenotypic Enhancement | FSW = 0.0211
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0052
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G02780 | PredictedAffinity Capture-MS | FSW = 0.0118
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G26340 | PredictedPhenotypic Enhancement | FSW = 0.0303
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G21700 | PredictedPhenotypic Suppression | FSW = 0.0187
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0323
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G01490 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2500
| Unknown | CAX4 (CATION EXCHANGER 4) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G19750 | PredictedPhenotypic Enhancement | FSW = 0.0178
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G26270 | PredictedAffinity Capture-MS | FSW = 0.0632
| Unknown | PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT1G54560 | Predictedbiochemical | FSW = 0.0324
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G70290 | Predictedbiochemical | FSW = 0.0371
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G14240 | Predictedbiochemical | FSW = 0.0085
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G25950 | Predictedbiochemical | FSW = 0.0361
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G55730 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.0190
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G55720 | PredictedPhylogenetic profile method | FSW = 0.1214
| Unknown | ATCAX6 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454