Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13490 - ( OVA5 (OVULE ABORTION 5) ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding )
36 Proteins interacs with AT3G13490| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G33210
   | Predictedpull down | FSW = 0.0448
| Class C:plastidmitochondrion | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
| AT4G35090
| Predictedpull down | FSW = 0.0257
| Class C:plastidmitochondrion | CAT2 (CATALASE 2) CATALASE |
| AT2G21170
| Predictedpull down | FSW = 0.0391
| Class C:plastidmitochondrion | TIM (TRIOSEPHOSPHATE ISOMERASE) CATALYTIC/ TRIOSE-PHOSPHATE ISOMERASE |
| AT1G11870
| Predictedpull down | FSW = 0.0295
| Class C:plastidmitochondrion | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
| AT1G56190
| Predictedpull down | FSW = 0.0661
| Class C:plastidmitochondrion | PHOSPHOGLYCERATE KINASE PUTATIVE |
| AT1G62750
| Predictedpull down | FSW = 0.0391
| Class C:plastidmitochondrion | SCO1 (SNOWY COTYLEDON 1) ATP BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT3G59760
| Predictedpull down | FSW = 0.0152
| Class C:plastidmitochondrion | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE |
| AT1G78380
| Predictedpull down | FSW = 0.1937
| Class C:plastid | ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19) GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
| AT2G35040
| Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0228
| Class C:plastid | AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN |
| AT2G38040
| Predictedpull down | FSW = 0.0679
| Class C:plastid | CAC3 ACETYL-COA CARBOXYLASE |
| AT3G44890
| Predictedpull down | FSW = 0.1422
| Class C:plastid | RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G11880
| Predictedpull down | FSW = 0.0245
| Class C:plastid | DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE |
| AT5G15450
| Predictedpull down | FSW = 0.0539
| Class C:plastid | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G13120
| Predictedpull down | FSW = 0.0713
| Class C:plastid | 30S RIBOSOMAL PROTEIN S10 CHLOROPLAST PUTATIVE |
| AT5G49030
| Predictedpull down | FSW = 0.0220
| Class C:plastid | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT3G04760
| PredictedGene fusion method | FSW = 0.0483
| Class C:plastid | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| ATCG00160 | Predictedpull down | FSW = 0.0478
| Class C:plastid | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
| ATCG00180 | Predictedpull down | FSW = 0.1931
| Class C:plastid | RNA POLYMERASE BETA SUBUNIT-1 |
| ATCG00190 | Predictedpull down | FSW = 0.1409
| Class C:plastid | CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION |
| ATCG00750 | Predictedpull down | FSW = 0.0256
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S11 |
| ATCG00800 | Predictedpull down | FSW = 0.0515
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN S3 A CONSTITUENT OF THE SMALL SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG00830 | Predictedpull down | FSW = 0.0703
| Class C:plastid | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
| ATCG01240 | Predictedpull down | FSW = 0.0564
| Class C:plastid | 30S CHLOROPLAST RIBOSOMAL PROTEIN S7 |
| AT4G02930
| Predictedpull down | FSW = 0.0524
| Class C:mitochondrion | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
| AT2G36530
| Predictedpull down | FSW = 0.0233
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
| AT1G79530
| Predictedpull down | FSW = 0.0680
| Unknown | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
| AT4G27270
| Predictedpull down | FSW = 0.0245
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
| AT4G38680
| Predictedpull down | FSW = 0.1418
| Unknown | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
| AT4G13780
| Predictedin vitro | FSW = 0.0600
| Unknown | METHIONINE--TRNA LIGASE PUTATIVE / METHIONYL-TRNA SYNTHETASE PUTATIVE / METRS PUTATIVE |
| AT3G11710
| PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0743
| Unknown | ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G71790
| Predictedtwo hybrid | FSW = 0.0138
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
| AT3G17760
| Predictedpull down | FSW = 0.0539
| Unknown | GAD5 (GLUTAMATE DECARBOXYLASE 5) CALMODULIN BINDING |
| AT5G23535
| Predictedpull down | FSW = 0.0578
| Unknown | KOW DOMAIN-CONTAINING PROTEIN |
| AT5G50630
| Predictedpull down | FSW = 0.0220
| Unknown | NODULIN FAMILY PROTEIN |
| AT1G13580
| Predictedinterologs mapping | FSW = 0.0078
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
| AT5G11310
| PredictedGene fusion method | FSW = 0.1500
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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