Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13550 - ( FUS9 (FUSCA 9) protein binding / ubiquitin-protein ligase )
42 Proteins interacs with AT3G13550Locus | Method | FSW ![]() | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G05530![]() ![]() ![]() ![]() | ExperimentalAffinity Capture-Western | FSW = 0.0157
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT2G32950![]() ![]() ![]() ![]() | ExperimentalAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybrid | FSW = 0.0713
| Unknown | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G10180![]() ![]() ![]() ![]() | Experimentalmolecular sievingpull downmolecular sievingReconstituted ComplexAffinity Capture-Westernin vitro | FSW = 0.1959
| Class D:plastid (p = 0.78)mitochondrion (p = 0.82) | DET1 (DE-ETIOLATED 1) CATALYTIC |
AT5G56280![]() ![]() ![]() ![]() | ExperimentalAffinity Capture-Western | FSW = 0.1469
| Class D:plastid (p = 0.78)mitochondrion (p = 0.82) | CSN6A |
AT4G05420![]() ![]() ![]() ![]() | Experimentalmolecular sievingpull downtwo hybridReconstituted ComplexAffinity Capture-Westernin vitrotwo hybrid | FSW = 0.0672
| Class D:plastid (p = 0.78) | DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING |
AT5G20570![]() ![]() ![]() ![]() | Experimentalmolecular sieving | FSW = 0.0231
| Class D:plastid (p = 0.78) | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT5G42970![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.1115
| Class D:plastid (p = 0.78) | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT5G14250![]() ![]() ![]() ![]() | ExperimentalAffinity Capture-Westerntwo hybrid | FSW = 0.1569
| Unknown | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT1G22920![]() ![]() ![]() ![]() | ExperimentalAffinity Capture-Western | FSW = 0.1013
| Unknown | CSN5A (COP9 SIGNALOSOME 5A) |
AT4G14110![]() ![]() ![]() ![]() | Experimentaltwo hybrid | FSW = 0.1336
| Unknown | COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) METALLOENDOPEPTIDASE/ PROTEIN BINDING |
AT5G46210![]() ![]() ![]() ![]() | Experimentalmolecular sievingtwo hybridAffinity Capture-Westernaffinity technology | FSW = 0.2077
| Unknown | CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G27960![]() ![]() ![]() ![]() | ExperimentalReconstituted ComplexReconstituted Complexin vitro | FSW = 0.2023
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT1G14400![]() ![]() ![]() ![]() | ExperimentalReconstituted Complexin vitro | FSW = 0.1120
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G41340![]() ![]() ![]() ![]() | ExperimentalReconstituted Complexin vitro | FSW = 0.0162
| Unknown | UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE |
AT1G29150![]() ![]() ![]() ![]() | ExperimentalAffinity Capture-Western | FSW = 0.0138
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G36340![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.3199
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT1G16890![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.3568
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G64230![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.1993
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT3G25530![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0224
| Unknown | GLYR1 (GLYOXYLATE REDUCTASE 1) 3-HYDROXYBUTYRATE DEHYDROGENASE/ PHOSPHOGLUCONATE DEHYDROGENASE (DECARBOXYLATING) |
AT3G04820![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0155
| Unknown | PSEUDOURIDINE SYNTHASE |
AT3G20060![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.1469
| Unknown | UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE |
AT1G77180![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0127
| Unknown | CHROMATIN PROTEIN FAMILY |
AT3G59500![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0162
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
AT1G19310![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0757
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT2G18940![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0508
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G60300![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0690
| Unknown | RWD DOMAIN-CONTAINING PROTEIN |
AT5G16640![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0148
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G48655![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0717
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G32340![]() ![]() ![]() ![]() | Predictedtwo hybrid | FSW = 0.0444
| Unknown | NHL8 PROTEIN BINDING / ZINC ION BINDING |
AT5G59300![]() ![]() ![]() ![]() | PredictedReconstituted Complex | FSW = 0.0730
| Unknown | UBC7 (UBIQUITIN CARRIER PROTEIN 7) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G08700![]() ![]() ![]() ![]() | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3057
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT1G78870![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.2630
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G46030![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.1412
| Unknown | UBC6 (UBIQUITIN-CONJUGATING ENZYME 6) UBIQUITIN-PROTEIN LIGASE |
AT3G57870![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.0271
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT1G50490![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.0801
| Unknown | UBC20 (UBIQUITIN-CONJUGATING ENZYME 20) UBIQUITIN-PROTEIN LIGASE |
AT5G56150![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.3158
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT3G08690![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.3932
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT5G53300![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.2547
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G41700![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.0917
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G32790![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.2354
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT2G16740![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.0743
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT5G25760![]() ![]() ![]() ![]() | PredictedPhylogenetic profile method | FSW = 0.3945
| Unknown | PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454