Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13550 - ( FUS9 (FUSCA 9) protein binding / ubiquitin-protein ligase )

42 Proteins interacs with AT3G13550
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G05530

Experimental

Affinity Capture-Western

FSW = 0.0157

Unknown

RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING
AT2G32950

Experimental

Affinity Capture-Western

two hybrid

Affinity Capture-Western

two hybrid

FSW = 0.0713

Unknown

COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G10180

Experimental

molecular sieving

pull down

molecular sieving

Reconstituted Complex

Affinity Capture-Western

in vitro

FSW = 0.1959

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

DET1 (DE-ETIOLATED 1) CATALYTIC
AT5G56280

Experimental

Affinity Capture-Western

FSW = 0.1469

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

CSN6A
AT4G05420

Experimental

molecular sieving

pull down

two hybrid

Reconstituted Complex

Affinity Capture-Western

in vitro

two hybrid

FSW = 0.0672

Class D:

plastid (p = 0.78)

DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING
AT5G20570

Experimental

molecular sieving

FSW = 0.0231

Class D:

plastid (p = 0.78)

RBX1 (RING-BOX 1) PROTEIN BINDING
AT5G42970

Experimental

two hybrid

FSW = 0.1115

Class D:

plastid (p = 0.78)

COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING
AT5G14250

Experimental

Affinity Capture-Western

two hybrid

FSW = 0.1569

Unknown

COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING
AT1G22920

Experimental

Affinity Capture-Western

FSW = 0.1013

Unknown

CSN5A (COP9 SIGNALOSOME 5A)
AT4G14110

Experimental

two hybrid

FSW = 0.1336

Unknown

COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) METALLOENDOPEPTIDASE/ PROTEIN BINDING
AT5G46210

Experimental

molecular sieving

two hybrid

Affinity Capture-Western

affinity technology

FSW = 0.2077

Unknown

CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G27960

Experimental

Reconstituted Complex

Reconstituted Complex

in vitro

FSW = 0.2023

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT1G14400

Experimental

Reconstituted Complex

in vitro

FSW = 0.1120

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT5G41340

Experimental

Reconstituted Complex

in vitro

FSW = 0.0162

Unknown

UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE
AT1G29150

Experimental

Affinity Capture-Western

FSW = 0.0138

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G36340

Predicted

Phylogenetic profile method

FSW = 0.3199

Unknown

UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT1G16890

Predicted

Phylogenetic profile method

FSW = 0.3568

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G64230

Predicted

Phylogenetic profile method

FSW = 0.1993

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT3G25530

Predicted

two hybrid

FSW = 0.0224

Unknown

GLYR1 (GLYOXYLATE REDUCTASE 1) 3-HYDROXYBUTYRATE DEHYDROGENASE/ PHOSPHOGLUCONATE DEHYDROGENASE (DECARBOXYLATING)
AT3G04820

Predicted

two hybrid

FSW = 0.0155

Unknown

PSEUDOURIDINE SYNTHASE
AT3G20060

Predicted

Phylogenetic profile method

FSW = 0.1469

Unknown

UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE
AT1G77180

Predicted

two hybrid

FSW = 0.0127

Unknown

CHROMATIN PROTEIN FAMILY
AT3G59500

Predicted

two hybrid

FSW = 0.0162

Unknown

INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT1G19310

Predicted

two hybrid

FSW = 0.0757

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G18940

Predicted

two hybrid

FSW = 0.0508

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G60300

Predicted

two hybrid

FSW = 0.0690

Unknown

RWD DOMAIN-CONTAINING PROTEIN
AT5G16640

Predicted

two hybrid

FSW = 0.0148

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G48655

Predicted

two hybrid

FSW = 0.0717

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G32340

Predicted

two hybrid

FSW = 0.0444

Unknown

NHL8 PROTEIN BINDING / ZINC ION BINDING
AT5G59300

Predicted

Reconstituted Complex

FSW = 0.0730

Unknown

UBC7 (UBIQUITIN CARRIER PROTEIN 7) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G08700

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3057

Unknown

UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT1G78870

Predicted

Phylogenetic profile method

FSW = 0.2630

Unknown

UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G46030

Predicted

Phylogenetic profile method

FSW = 0.1412

Unknown

UBC6 (UBIQUITIN-CONJUGATING ENZYME 6) UBIQUITIN-PROTEIN LIGASE
AT3G57870

Predicted

Phylogenetic profile method

FSW = 0.0271

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT1G50490

Predicted

Phylogenetic profile method

FSW = 0.0801

Unknown

UBC20 (UBIQUITIN-CONJUGATING ENZYME 20) UBIQUITIN-PROTEIN LIGASE
AT5G56150

Predicted

Phylogenetic profile method

FSW = 0.3158

Unknown

UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT3G08690

Predicted

Phylogenetic profile method

FSW = 0.3932

Unknown

UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT5G53300

Predicted

Phylogenetic profile method

FSW = 0.2547

Unknown

UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT5G41700

Predicted

Phylogenetic profile method

FSW = 0.0917

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G32790

Predicted

Phylogenetic profile method

FSW = 0.2354

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT2G16740

Predicted

Phylogenetic profile method

FSW = 0.0743

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT5G25760

Predicted

Phylogenetic profile method

FSW = 0.3945

Unknown

PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454