Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13700 - ( RNA-binding protein putative )
20 Proteins interacs with AT3G13700Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G35410 | Predictedtwo hybrid | FSW = 0.2560
| Unknown | 33 KDA RIBONUCLEOPROTEIN CHLOROPLAST PUTATIVE / RNA-BINDING PROTEIN CP33 PUTATIVE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0097
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G18040 | Predictedtwo hybrid | FSW = 0.0122
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G21700 | Predictedtwo hybrid | FSW = 0.0195
| Unknown | SGP2 GTP BINDING |
AT2G43810 | PredictedPhenotypic Suppression | FSW = 0.0106
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT5G54840 | Predictedinteraction prediction | FSW = 0.0136
| Unknown | SGP1 GTP BINDING |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0401
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT2G35320 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG) PROTEIN TYROSINE PHOSPHATASE METAL-DEPENDENT |
AT5G53680 | Predictedtwo hybrid | FSW = 0.0704
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G06610 | Predictedtwo hybrid | FSW = 0.1391
| Unknown | DNA-BINDING ENHANCER PROTEIN-RELATED |
AT3G48150 | Predictedtwo hybrid | FSW = 0.0313
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT4G24710 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0116
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G52790 | Predictedtwo hybrid | FSW = 0.0324
| Unknown | CBS DOMAIN-CONTAINING PROTEIN-RELATED |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.0442
| Unknown | SNL5 (SIN3-LIKE 5) |
AT3G54380 | PredictedPhenotypic Suppression | FSW = 0.0533
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT5G61650 | Predictedtwo hybrid | FSW = 0.0775
| Unknown | CYCP42 (CYCLIN P42) CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G46190 | Predictedtwo hybrid | FSW = 0.0155
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT2G44740 | Predictedtwo hybridinteraction prediction | FSW = 0.1154
| Unknown | CYCP41 (CYCLIN P41) CYCLIN-DEPENDENT PROTEIN KINASE |
AT1G02690 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454