Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13720 - ( PRA8 )
20 Proteins interacs with AT3G13720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G34690 | Experimentaltwo hybrid | FSW = 0.0726
| Unknown | ACD11 (ACCELERATED CELL DEATH 11) SPHINGOSINE TRANSMEMBRANE TRANSPORTER |
AT5G16840 | Experimentaltwo hybrid | FSW = 0.0775
| Unknown | BPA1 (BINDINGPARTNEROFACD11 1) NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / OXIDOREDUCTASE |
AT5G25400 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.2238
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT5G16150 | PredictedSynthetic Lethality | FSW = 0.0319
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G51820 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.1371
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G48860 | PredictedPhenotypic Enhancement | FSW = 0.1558
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT2G43030 | PredictedPhenotypic Enhancement | FSW = 0.0269
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.1091
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G80050 | PredictedSynthetic LethalityPhenotypic Enhancementinterologs mapping | FSW = 0.1616
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G08720 | PredictedPhenotypic Enhancement | FSW = 0.1212
| Unknown | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT1G79020 | PredictedSynthetic Lethalityinterologs mappinginterologs mappingSynthetic Lethalityinterologs mapping | FSW = 0.2800
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.0340
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.0806
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G42120 | PredictedSynthetic LethalityPhenotypic Enhancementinterologs mapping | FSW = 0.2182
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT1G52500 | PredictedSynthetic LethalityPhenotypic Enhancementinterologs mapping | FSW = 0.1441
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0277
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G01600 | PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancement | FSW = 0.2861
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT2G48100 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinterologs mappingSynthetic LethalityPhenotypic Enhancementinterologs mapping | FSW = 0.1332
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G59540 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappingPhenotypic Enhancement | FSW = 0.1283
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G37980 | PredictedReconstituted ComplexSynthetic Lethality | FSW = 0.0443
| Unknown | ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454