Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13720 - ( PRA8 )

20 Proteins interacs with AT3G13720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G34690

Experimental

two hybrid

FSW = 0.0726

Unknown

ACD11 (ACCELERATED CELL DEATH 11) SPHINGOSINE TRANSMEMBRANE TRANSPORTER
AT5G16840

Experimental

two hybrid

FSW = 0.0775

Unknown

BPA1 (BINDINGPARTNEROFACD11 1) NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / OXIDOREDUCTASE
AT5G25400

Predicted

Synthetic Lethality

Synthetic Lethality

interologs mapping

FSW = 0.2238

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT5G16150

Predicted

Synthetic Lethality

FSW = 0.0319

Unknown

PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G51820

Predicted

Synthetic Lethality

Synthetic Lethality

interologs mapping

FSW = 0.1371

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT1G48860

Predicted

Phenotypic Enhancement

FSW = 0.1558

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT2G43030

Predicted

Phenotypic Enhancement

FSW = 0.0269

Unknown

RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT4G21680

Predicted

Phenotypic Enhancement

FSW = 0.1091

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G80050

Predicted

Synthetic Lethality

Phenotypic Enhancement

interologs mapping

FSW = 0.1616

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT3G08720

Predicted

Phenotypic Enhancement

FSW = 0.1212

Unknown

S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE
AT1G79020

Predicted

Synthetic Lethality

interologs mapping

interologs mapping

Synthetic Lethality

interologs mapping

FSW = 0.2800

Unknown

TRANSCRIPTION FACTOR-RELATED
AT4G25340

Predicted

Phenotypic Enhancement

FSW = 0.0340

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT2G19980

Predicted

Phenotypic Enhancement

FSW = 0.0806

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT2G42120

Predicted

Synthetic Lethality

Phenotypic Enhancement

interologs mapping

FSW = 0.2182

Unknown

POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G52500

Predicted

Synthetic Lethality

Phenotypic Enhancement

interologs mapping

FSW = 0.1441

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.0277

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G01600

Predicted

Synthetic Lethality

interologs mapping

Phenotypic Enhancement

FSW = 0.2861

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT2G48100

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interologs mapping

Synthetic Lethality

Phenotypic Enhancement

interologs mapping

FSW = 0.1332

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G59540Predicted

Synthetic Lethality

Synthetic Lethality

interologs mapping

Phenotypic Enhancement

FSW = 0.1283

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT4G37980

Predicted

Reconstituted Complex

Synthetic Lethality

FSW = 0.0443

Unknown

ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454