Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13770 - ( pentatricopeptide (PPR) repeat-containing protein )

7 Proteins interacs with AT3G13770
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G03880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2455

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G34210

Predicted

Gene fusion method

FSW = 0.3036

Unknown

SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) KINASE
AT5G27330

Predicted

Gene fusion method

FSW = 0.3036

Unknown

LOCATED IN ENDOPLASMIC RETICULUM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PREFOLDIN (INTERPROIPR009053) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G051301) HAS 110457 BLAST HITS TO 56483 PROTEINS IN 2051 SPECIES ARCHAE - 1653 BACTERIA - 15111 METAZOA - 52441 FUNGI - 7858 PLANTS - 4309 VIRUSES - 584 OTHER EUKARYOTES - 28501 (SOURCE NCBI BLINK)
AT2G25490

Predicted

Gene fusion method

FSW = 0.1451

Unknown

EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G40410

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3037

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT1G080701) HAS 12213 BLAST HITS TO 4641 PROTEINS IN 127 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 61 FUNGI - 12 PLANTS - 12006 VIRUSES - 0 OTHER EUKARYOTES - 134 (SOURCE NCBI BLINK)
AT2G41080

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1955

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G21810

Predicted

Gene fusion method

FSW = 0.2882

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF869 PLANT (INTERPROIPR008587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G775802) HAS 62951 BLAST HITS TO 33517 PROTEINS IN 1593 SPECIES ARCHAE - 800 BACTERIA - 6354 METAZOA - 33836 FUNGI - 4765 PLANTS - 2651 VIRUSES - 311 OTHER EUKARYOTES - 14234 (SOURCE NCBI BLINK)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454