Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G14090 - ( ATEXO70D3 (exocyst subunit EXO70 family protein D3) protein binding )
24 Proteins interacs with AT3G14090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G33140 | PredictedSynthetic Lethality | FSW = 0.0075
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G24770 | PredictedSynthetic Lethality | FSW = 0.1051
| Unknown | VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE |
AT3G26590 | Predictedbiochemical | FSW = 0.0137
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G01690 | Predictedinterologs mapping | FSW = 0.0340
| Unknown | BINDING |
AT1G07890 | PredictedSynthetic Lethality | FSW = 0.0737
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT5G64270 | PredictedSynthetic Lethality | FSW = 0.0254
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G19170 | Predictedinterologs mapping | FSW = 0.0237
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT5G51820 | PredictedSynthetic Lethality | FSW = 0.0243
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G02780 | Predictedinterologs mapping | FSW = 0.0214
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G19690 | Predictedinterologs mapping | FSW = 0.0262
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT5G50380 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1481
| Unknown | ATEXO70F1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN F1) PROTEIN BINDING |
AT4G34430 | PredictedSynthetic Lethality | FSW = 0.0086
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0187
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G13920 | Predictedinterologs mapping | FSW = 0.0260
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G49920 | PredictedSynthetic Lethality | FSW = 0.0156
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT1G06090 | Predictedinterologs mapping | FSW = 0.0459
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
AT1G52500 | PredictedSynthetic Lethality | FSW = 0.0256
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0269
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G06580 | PredictedSynthetic Lethality | FSW = 0.0677
| Unknown | GALK ATP BINDING / GALACTOKINASE |
AT2G16740 | PredictedSynthetic Lethality | FSW = 0.0074
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT4G14240 | Predictedbiochemical | FSW = 0.0155
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT3G60240 | PredictedSynthetic Lethality | FSW = 0.0202
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G21800 | PredictedSynthetic Rescue | FSW = 0.0086
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G66620 | PredictedSynthetic Lethality | FSW = 0.0920
| Unknown | DAR6 (DA1-RELATED PROTEIN 6) ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454