Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G14270 - ( phosphatidylinositol-4-phosphate 5-kinase family protein )
28 Proteins interacs with AT3G14270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G54770 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridPhenotypic Enhancementtwo hybridPhenotypic Enhancement | FSW = 0.2241
| Class C:mitochondrion | THI1 PROTEIN HOMODIMERIZATION |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0114
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G19980 | Predictedinteraction prediction | FSW = 0.0033
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G49370 | PredictedPhenotypic Enhancement | FSW = 0.2661
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT4G14350 | Predictedtwo hybridtwo hybridtwo hybridAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.2037
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G04340 | PredictedReconstituted ComplexReconstituted ComplexCo-purification | FSW = 0.2476
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G80050 | PredictedPhenotypic Suppression | FSW = 0.0170
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G67270 | Predictedinteraction prediction | FSW = 0.0458
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G36170 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1142
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G21700 | Predictedtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0717
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.1479
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT1G47830 | PredictedPhenotypic SuppressionAffinity Capture-MS | FSW = 0.0693
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G75380 | PredictedAffinity Capture-MSPhenotypic Enhancementtwo hybridtwo hybridtwo hybridtwo hybridReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationtwo hybridtwo hybridAffinity Capture-WesternReconstituted Complextwo hybridCo-purificationinterologs mappingPhenotypic Enhancement | FSW = 0.3537
| Unknown | WOUND-RESPONSIVE PROTEIN-RELATED |
AT1G80510 | PredictedAffinity Capture-MS | FSW = 0.0807
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G80500 | PredictedReconstituted Complexinterologs mapping | FSW = 0.1729
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT ER TO GOLGI VESICLE-MEDIATED TRANSPORT LOCATED IN INTRACELLULAR EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SEDLIN (INTERPROIPR006722) LONGIN-LIKE (INTERPROIPR011012) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G209301) HAS 437 BLAST HITS TO 435 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 248 FUNGI - 75 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 61 (SOURCE NCBI BLINK) |
AT3G11530 | PredictedPhenotypic Enhancement | FSW = 0.0938
| Unknown | VACUOLAR PROTEIN SORTING 55 FAMILY PROTEIN / VPS55 FAMILY PROTEIN |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0482
| Unknown | UNKNOWN PROTEIN |
AT5G01770 | PredictedPhenotypic Suppressiontwo hybrid | FSW = 0.1309
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G17330 | PredictedReconstituted Complextwo hybrid | FSW = 0.1548
| Unknown | GAD CALMODULIN BINDING / GLUTAMATE DECARBOXYLASE |
AT3G59540 | PredictedPhenotypic Suppression | FSW = 0.0461
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G19510 | PredictedCo-purification | FSW = 0.0623
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.0812
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT5G49510 | Predictedinteraction prediction | FSW = 0.0383
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G23290 | Predictedinteraction prediction | FSW = 0.0386
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT3G22480 | Predictedinteraction prediction | FSW = 0.0356
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT1G29990 | Predictedinteraction prediction | FSW = 0.0334
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G08780 | Predictedinteraction prediction | FSW = 0.0389
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT5G03220 | Predictedinteraction prediction | FSW = 0.0156
| Unknown | TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454