Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G14290 - ( PAE2 endopeptidase/ peptidase/ threonine-type endopeptidase )

40 Proteins interacs with AT3G14290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G25490

Experimental

biochemical

FSW = 0.1352

Class D:

cytosol (p = 0.67)

EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G07698

Predicted

two hybrid

FSW = 0.0143

Unknown

ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE
AT5G09590

Predicted

Synthetic Lethality

FSW = 0.0276

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT5G66140

Predicted

two hybrid

Phylogenetic profile method

Co-expression

FSW = 0.4038

Unknown

PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G51260

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2363

Unknown

PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G15710

Predicted

two hybrid

FSW = 0.1620

Unknown

SIGNAL PEPTIDASE PUTATIVE
AT1G53850

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.4457

Unknown

PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G27020

Predicted

interaction prediction

Phylogenetic profile method

Co-expression

FSW = 0.3543

Unknown

PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G44170

Predicted

Affinity Capture-MS

FSW = 0.0227

Unknown

ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT3G62870

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0166

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G22110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1082

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G35590

Predicted

Phylogenetic profile method

FSW = 0.3266

Unknown

PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

interaction prediction

Co-expression

FSW = 0.1168

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G18160

Predicted

Affinity Capture-MS

FSW = 0.0454

Unknown

KCO6 OUTWARD RECTIFIER POTASSIUM CHANNEL
AT3G60820

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3390

Unknown

PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G31810

Predicted

co-fractionation

Co-fractionation

Phenotypic Enhancement

FSW = 0.2009

Unknown

ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE
AT3G53890

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

two hybrid

FSW = 0.1104

Unknown

40S RIBOSOMAL PROTEIN S21 (RPS21B)
AT3G43810

Predicted

interaction prediction

FSW = 0.0037

Unknown

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT2G42500

Predicted

interaction prediction

FSW = 0.1551

Unknown

PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G47250

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2970

Unknown

PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G18040

Predicted

interaction prediction

FSW = 0.0141

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G42790

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2931

Unknown

PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G17420

Predicted

two hybrid

FSW = 0.1451

Unknown

NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE
AT5G19310

Predicted

two hybrid

FSW = 0.0309

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT3G20970

Predicted

Affinity Capture-MS

FSW = 0.0054

Unknown

NFU4 STRUCTURAL MOLECULE
AT3G54300

Predicted

Affinity Capture-MS

FSW = 0.0106

Unknown

ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)
AT1G16470

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2898

Unknown

PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G77440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1775

Unknown

PBC2 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G05840

Predicted

Phylogenetic profile method

FSW = 0.2264

Unknown

PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G56580

Predicted

two hybrid

FSW = 0.0210

Unknown

MKK6 (MAP KINASE KINASE 6) MAP KINASE KINASE/ KINASE
AT5G12410

Predicted

two hybrid

Co-expression

FSW = 0.1137

Unknown

THUMP DOMAIN-CONTAINING PROTEIN
AT1G13950

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.1207

Unknown

ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT1G77780

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.1964

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT3G11290

Predicted

two hybrid

FSW = 0.2068

Unknown

UNKNOWN PROTEIN
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0208

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT4G36050

Predicted

two hybrid

FSW = 0.0480

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G57950

Predicted

Affinity Capture-MS

FSW = 0.0593

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT3G24010

Predicted

two hybrid

FSW = 0.0684

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G53030

Predicted

two hybrid

FSW = 0.0878

Unknown

SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT1G79210

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2034

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454