Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G14390 - ( diaminopimelate decarboxylase putative / DAP carboxylase putative )
18 Proteins interacs with AT3G14390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G44170 | PredictedSynthetic Lethality | FSW = 0.0455
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
AT3G53740 | PredictedSynthetic Lethality | FSW = 0.0972
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36B) |
AT3G26590 | Predictedbiochemical | FSW = 0.0048
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0406
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT4G30310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4629
| Unknown | RIBITOL KINASE PUTATIVE |
AT5G11880 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0847
| Unknown | DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE |
AT5G19450 | PredictedAffinity Capture-MS | FSW = 0.0663
| Unknown | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT3G54610 | PredictedSynthetic Rescue | FSW = 0.0153
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G06010 | Predictedsynthetic growth defect | FSW = 0.0364
| Unknown | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G27680 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | MSP1 PROTEIN PUTATIVE / INTRAMITOCHONDRIAL SORTING PROTEIN PUTATIVE |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0379
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT2G20000 | Predictedbiochemical | FSW = 0.0149
| Unknown | HBT (HOBBIT) BINDING |
AT3G58830 | Predictedsynthetic growth defect | FSW = 0.0994
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
AT5G17440 | PredictedAffinity Capture-MS | FSW = 0.2743
| Unknown | LUC7 N_TERMINUS DOMAIN-CONTAINING PROTEIN |
AT4G36630 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT3G02470 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0762
| Unknown | SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) ADENOSYLMETHIONINE DECARBOXYLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454