Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G14420 - ( (S)-2-hydroxy-acid oxidase peroxisomal putative / glycolate oxidase putative / short chain alpha-hydroxy acid oxidase putative )
33 Proteins interacs with AT3G14420| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G46090
   | Experimental | FSW = 0.0095
| Unknown | ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT3G03920
| PredictedPhenotypic Enhancement | FSW = 0.1125
| Class C:plastidnucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT3G20550
| PredictedCo-purification | FSW = 0.0313
| Class C:plastidnucleus | DDL (DAWDLE) |
| AT1G74710
| Predictedsynthetic growth defect | FSW = 0.0423
| Class C:plastidnucleus | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
| AT2G31910
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.2691
| Class C:plastid | ATCHX21 (CATION/H+ EXCHANGER 21) SODIUMHYDROGEN ANTIPORTER |
| AT5G63980
| PredictedPhenotypic Enhancement | FSW = 0.0706
| Class C:plastid | SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE |
| AT3G14415
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.1691
| Class C:peroxisomenucleus | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
| AT4G18360
| PredictedPhylogenetic profile method | FSW = 0.1508
| Class C:peroxisome | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
| AT3G14130
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1268
| Class C:peroxisome | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
| AT3G14150
| PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1268
| Class C:peroxisome | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
| AT3G09440
| PredictedAffinity Capture-MS | FSW = 0.0216
| Class C:nucleus | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
| AT2G33370 | PredictedAffinity Capture-Westerntwo hybridCo-purification | FSW = 0.1108
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
| AT4G28860
| PredictedAffinity Capture-Western | FSW = 0.0847
| Class C:nucleus | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G13460
| PredictedAffinity Capture-Western | FSW = 0.2898
| Class C:nucleus | ECT2 PROTEIN BINDING |
| AT2G44860
| PredictedAffinity Capture-MS | FSW = 0.0063
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L24 PUTATIVE |
| AT3G21700
| PredictedAffinity Capture-MS | FSW = 0.0216
| Class C:nucleus | SGP2 GTP BINDING |
| AT2G43160
| PredictedAffinity Capture-Western | FSW = 0.0314
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
| AT3G62870
| PredictedSynthetic Lethality | FSW = 0.0217
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G13560
| Predictedtwo hybridSynthetic Rescuesynthetic growth defect | FSW = 0.0847
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT5G05670
| Predictedinterologs mapping | FSW = 0.0674
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
| AT4G19690
| PredictedCo-purificationbiochemical | FSW = 0.1370
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
| AT1G64880
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0503
| Unknown | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| AT3G08730
| Predictedinterologs mapping | FSW = 0.0157
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G10330 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerninterologs mappingReconstituted ComplexCo-purification | FSW = 0.0759
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
| AT4G30800
| PredictedAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0554
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT2G17800
| Predictedtwo hybrid | FSW = 0.0522
| Unknown | ARAC1 GTP BINDING |
| AT3G44320
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.2597
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
| AT1G06090
| Predictedinterologs mapping | FSW = 0.0581
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
| AT2G47970
| PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSAffinity Capture-Western | FSW = 0.1507
| Unknown | NPL4 FAMILY PROTEIN |
| AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0312
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
| AT5G10930
| PredictedAffinity Capture-Westerntwo hybridCo-purification | FSW = 0.2598
| Unknown | CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G19150
| PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | CARBOHYDRATE KINASE FAMILY |
| AT5G13150
| PredictedAffinity Capture-MS | FSW = 0.0857
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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