Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G14600 - ( 60S ribosomal protein L18A (RPL18aC) )
16 Proteins interacs with AT3G14600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G34480 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0473
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT1G05570 | Predictedinteraction prediction | FSW = 0.0514
| Unknown | CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | ZINC ION BINDING |
AT1G29880 | Predictedinterologs mappingAffinity Capture-MS | FSW = 0.1000
| Unknown | GLYCYL-TRNA SYNTHETASE / GLYCINE--TRNA LIGASE |
AT4G00900 | Predictedtwo hybrid | FSW = 0.0443
| Unknown | ECA2 (ER-TYPE CA2+-ATPASE 2) CALCIUM-TRANSPORTING ATPASE |
AT2G44530 | Predictedtwo hybrid | FSW = 0.0692
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE |
AT5G47080 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT4G15930 | Predictedtwo hybrid | FSW = 0.0114
| Unknown | MICROTUBULE MOTOR |
AT5G11010 | Predictedtwo hybrid | FSW = 0.0857
| Unknown | PRE-MRNA CLEAVAGE COMPLEX-RELATED |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.0273
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0265
| Unknown | COX19 FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G51180 | Predictedtwo hybrid | FSW = 0.1390
| Unknown | UNKNOWN PROTEIN |
AT5G43710 | Predictedinteraction prediction | FSW = 0.0783
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT1G29965 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.1010
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454