Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G15000 - ( LOCATED IN mitochondrion EXPRESSED IN 23 plant structures EXPRESSED DURING 13 growth stages BEST Arabidopsis thaliana protein match is plastid developmental protein DAG putative (TAIRAT3G067902) Has 50779 Blast hits to 24732 proteins in 941 species Archae - 10 Bacteria - 4862 Metazoa - 25623 Fungi - 7071 Plants - 6957 Viruses - 900 Other Eukaryotes - 5356 (source NCBI BLink) )

11 Proteins interacs with AT3G15000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G64960

Experimental

FSW = 0.0672

Class B:

unclear

plastid

peroxisome

mitochondrion

Class D:

nucleus (p = 0.78)

 CDKC2 (CYCLIN DEPENDENT KINASE GROUP C 2) KINASE
AT5G10270

Experimental

FSW = 0.0289

Unknown

 CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G20020

Predicted

two hybrid

FSW = 0.0171

Unknown

 RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G22220

Predicted

Phenotypic Enhancement

FSW = 0.0208

Unknown

 E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G29570

Predicted

two hybrid

FSW = 0.0146

Unknown

 PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT5G47820

Predicted

two hybrid

FSW = 0.0585

Unknown

 FRA1 (FRAGILE FIBER 1) MICROTUBULE MOTOR
AT5G52650

Predicted

two hybrid

FSW = 0.0394

Unknown

 40S RIBOSOMAL PROTEIN S10 (RPS10C)
AT3G07790

Predicted

two hybrid

FSW = 0.0356

Unknown

 DGCR14-RELATED
AT3G19810

Predicted

two hybrid

FSW = 0.0482

Unknown

 UNKNOWN PROTEIN
AT3G22590

Predicted

two hybrid

FSW = 0.0157

Unknown

 RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G38630

Predicted

two hybrid

FSW = 0.0056

Unknown

 RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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