Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G15470 - ( WD-40 repeat family protein )
21 Proteins interacs with AT3G15470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT4G14800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0328
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G20550 | Predictedco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.0180
| Unknown | DDL (DAWDLE) |
AT5G42130 | Predictedtwo hybridSynthetic Rescueinterologs mappingAffinity Capture-Western | FSW = 0.0800
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G49030 | PredictedSynthetic Lethality | FSW = 0.0351
| Unknown | OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G02600 | Predictedtwo hybrid | FSW = 0.0392
| Unknown | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0052
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G04720 | PredictedSynthetic Lethality | FSW = 0.0274
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G19690 | Predictedco-fractionationCo-fractionation | FSW = 0.0294
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT1G59740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0155
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0391
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT5G59720 | PredictedSynthetic Lethality | FSW = 0.0317
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT1G15440 | Predictedtwo hybrid | FSW = 0.0388
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G59960 | PredictedAffinity Capture-MS | FSW = 0.0351
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT1G66590 | PredictedSynthetic Lethality | FSW = 0.0059
| Unknown | COX19 FAMILY PROTEIN |
AT2G37840 | Predictedbiochemical | FSW = 0.0189
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G01090 | Predictedbiochemical | FSW = 0.0207
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G25597 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | UNKNOWN PROTEIN |
AT4G04700 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G24840 | PredictedAffinity Capture-MSAffinity Capture-WesternReconstituted Complextwo hybridAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.0694
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT3G18370 | Predictedtwo hybrid | FSW = 0.1852
| Unknown | ATSYTF |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454