Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G15470 - ( WD-40 repeat family protein )

21 Proteins interacs with AT3G15470
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G49910

Predicted

Affinity Capture-MS

FSW = 0.0148

Unknown

60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT4G14800

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0328

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G20550

Predicted

co-fractionation

Co-fractionation

Synthetic Lethality

FSW = 0.0180

Unknown

DDL (DAWDLE)
AT5G42130

Predicted

two hybrid

Synthetic Rescue

interologs mapping

Affinity Capture-Western

FSW = 0.0800

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G49030

Predicted

Synthetic Lethality

FSW = 0.0351

Unknown

OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G02600

Predicted

two hybrid

FSW = 0.0392

Unknown

LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0052

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G04720

Predicted

Synthetic Lethality

FSW = 0.0274

Unknown

CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G19690

Predicted

co-fractionation

Co-fractionation

FSW = 0.0294

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT1G59740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0155

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G47510

Predicted

Affinity Capture-MS

FSW = 0.0391

Unknown

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT5G59720

Predicted

Synthetic Lethality

FSW = 0.0317

Unknown

HSP182 (HEAT SHOCK PROTEIN 182)
AT1G15440

Predicted

two hybrid

FSW = 0.0388

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G59960

Predicted

Affinity Capture-MS

FSW = 0.0351

Unknown

ALDO/KETO REDUCTASE PUTATIVE
AT1G66590

Predicted

Synthetic Lethality

FSW = 0.0059

Unknown

COX19 FAMILY PROTEIN
AT2G37840

Predicted

biochemical

FSW = 0.0189

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G01090

Predicted

biochemical

FSW = 0.0207

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G25597

Predicted

Affinity Capture-MS

FSW = 0.0392

Unknown

UNKNOWN PROTEIN
AT4G04700

Predicted

Affinity Capture-MS

FSW = 0.0124

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G24840

Predicted

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0694

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT3G18370

Predicted

two hybrid

FSW = 0.1852

Unknown

ATSYTF

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454