Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G15730 - ( PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) phospholipase D )

6 Proteins interacs with AT3G15730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G53420

Experimental

in vitro

FSW = 0.0635

Class A:

plastid

Class B:

plasma membrane

nucleus

PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) WATER CHANNEL
AT3G18165

Experimental

FSW = 0.0573

Class B:

unclear

plastid

nucleus

Class D:

cytosol (p = 0.67)

MOS4 (MODIFIER OF SNC14)
AT2G26300

Experimental

pull down

interaction detection method

Reconstituted Complex

in vitro

FSW = 0.0329

Class B:

plastid

plasma membrane

Class D:

cytosol (p = 0.67)

GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER
AT1G31930

Experimental

FSW = 0.0937

Class B:

plastid

nucleus

XLG3 (EXTRA-LARGE GTP-BINDING PROTEIN 3) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER
AT5G25370

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1973

Unknown

PLDALPHA3 (PHOSPHLIPASE D ALPHA 3) PHOSPHOLIPASE D
AT1G55180

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1170

Unknown

PLDEPSILON (PHOSPHOLIPASE D ALPHA 4) PHOSPHOLIPASE D

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454