Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G16320 - ( CDC27a binding )

21 Proteins interacs with AT3G16320
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G04660

Experimental

interaction detection method

two hybrid

FSW = 0.1673

Unknown

APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G10450

Predicted

two hybrid

FSW = 0.0218

Unknown

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G18040

Predicted

in vitro

in vitro

Affinity Capture-MS

FSW = 0.0117

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G70920

Predicted

Affinity Capture-MS

in vitro

in vivo

FSW = 0.1333

Unknown

ATHB18 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 18) DNA BINDING / TRANSCRIPTION FACTOR
AT3G25980

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0683

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT2G42810

Predicted

two hybrid

in vitro

FSW = 0.0655

Unknown

PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0127

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT4G32720

Predicted

two hybrid

two hybrid

FSW = 0.0190

Unknown

ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT1G06590

Predicted

in vivo

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.5238

Unknown

UNKNOWN PROTEIN
AT1G78770

Predicted

two hybrid

in vitro

Affinity Capture-Western

FSW = 0.1260

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT2G18290

Predicted

Affinity Capture-Western

FSW = 0.1609

Unknown

ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY
AT2G39090

Predicted

Affinity Capture-Western

FSW = 0.3976

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT2G20635Predicted

in vivo

Affinity Capture-MS

FSW = 0.1001

Unknown

ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G21530Predicted

Affinity Capture-Western

FSW = 0.6050

Unknown

NUCLEOTIDE BINDING
AT5G13840

Predicted

Affinity Capture-Western

FSW = 0.1984

Unknown

FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER
AT5G27080

Predicted

in vitro

in vivo

in vivo

in vitro

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

FSW = 0.4032

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT3G48150

Predicted

Affinity Capture-Western

FSW = 0.2273

Unknown

APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING
AT5G05560

Predicted

Affinity Capture-Western

FSW = 0.4020

Unknown

EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE
AT4G33260

Predicted

in vivo

in vitro

Affinity Capture-MS

in vitro

in vivo

FSW = 0.2180

Unknown

CDC202 SIGNAL TRANSDUCER
AT2G33560

Predicted

Affinity Capture-MS

in vivo

FSW = 0.0495

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT4G11920

Predicted

in vivo

Co-expression

FSW = 0.1333

Unknown

CCS52A2 SIGNAL TRANSDUCER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454