Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G16320 - ( CDC27a binding )
21 Proteins interacs with AT3G16320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G04660 | Experimentalinteraction detection methodtwo hybrid | FSW = 0.1673
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G10450 | Predictedtwo hybrid | FSW = 0.0218
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G18040 | Predictedin vitroin vitroAffinity Capture-MS | FSW = 0.0117
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G70920 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.1333
| Unknown | ATHB18 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 18) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G25980 | Predictedin vivoAffinity Capture-MS | FSW = 0.0683
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G42810 | Predictedtwo hybridin vitro | FSW = 0.0655
| Unknown | PP52 (PROTEIN PHOSPHATASE 52) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0127
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G32720 | Predictedtwo hybridtwo hybrid | FSW = 0.0190
| Unknown | ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING |
AT1G06590 | Predictedin vivoAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Western | FSW = 0.5238
| Unknown | UNKNOWN PROTEIN |
AT1G78770 | Predictedtwo hybridin vitroAffinity Capture-Western | FSW = 0.1260
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G18290 | PredictedAffinity Capture-Western | FSW = 0.1609
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT2G39090 | PredictedAffinity Capture-Western | FSW = 0.3976
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT2G20635 | Predictedin vivoAffinity Capture-MS | FSW = 0.1001
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G21530 | PredictedAffinity Capture-Western | FSW = 0.6050
| Unknown | NUCLEOTIDE BINDING |
AT5G13840 | PredictedAffinity Capture-Western | FSW = 0.1984
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT5G27080 | Predictedin vitroin vivoin vivoin vitroAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.4032
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G48150 | PredictedAffinity Capture-Western | FSW = 0.2273
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT5G05560 | PredictedAffinity Capture-Western | FSW = 0.4020
| Unknown | EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE |
AT4G33260 | Predictedin vivoin vitroAffinity Capture-MSin vitroin vivo | FSW = 0.2180
| Unknown | CDC202 SIGNAL TRANSDUCER |
AT2G33560 | PredictedAffinity Capture-MSin vivo | FSW = 0.0495
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT4G11920 | Predictedin vivoCo-expression | FSW = 0.1333
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454