Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G16640 - ( TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) )
14 Proteins interacs with AT3G16640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01950 | Experimentalphage display | FSW = 0.0488
| Class D:cytosol (p = 0.67) | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT3G46090 | Experimental | FSW = 0.0200
| Unknown | ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G42580 | Experimentalphage display | FSW = 0.0476
| Unknown | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) BINDING / PROTEIN BINDING |
AT4G11150 | Predictedtwo hybridtwo hybrid | FSW = 0.0833
| Class C:vacuoleplasma membrane | TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G57720 | PredictedAffinity Capture-MS | FSW = 0.0261
| Class C:plasma membrane | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G57015 | PredictedAffinity Capture-MS | FSW = 0.0204
| Class C:nucleus | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G19210 | PredictedAffinity Capture-MS | FSW = 0.0211
| Class C:nucleus | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G43860 | PredictedAffinity Capture-MS | FSW = 0.0870
| Unknown | TRANSCRIPTION FACTOR |
AT3G10530 | PredictedAffinity Capture-MS | FSW = 0.0758
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G16970 | PredictedSynthetic Lethality | FSW = 0.0165
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G50430 | PredictedAffinity Capture-MS | FSW = 0.0448
| Unknown | UBC33 (UBIQUITIN-CONJUGATING ENZYME 33) UBIQUITIN-PROTEIN LIGASE |
AT3G48150 | Predictedtwo hybrid | FSW = 0.0417
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT2G39760 | Predictedtwo hybrid | FSW = 0.0471
| Unknown | BPM3 PROTEIN BINDING |
AT3G05540 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1713
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454