Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G16650 - ( PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2) )
40 Proteins interacs with AT3G16650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0025
| Unknown | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G20260 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G50850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0195
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT1G58030 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT2G01690 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | BINDING |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2288
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09760 | PredictedAffinity Capture-MS | FSW = 0.2491
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3027
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G80070 | PredictedAffinity Capture-MS | FSW = 0.2034
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.1790
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT2G47250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1271
| Unknown | RNA HELICASE PUTATIVE |
AT4G28540 | PredictedGene fusion method | FSW = 0.0620
| Unknown | CKL6 (CASEIN KINASE I-LIKE 6) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G24510 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT5G07320 | PredictedGene fusion method | FSW = 0.0465
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0953
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G30220 | PredictedAffinity Capture-MS | FSW = 0.1763
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.2158
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT1G04510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2281
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G02530 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | CHAPERONIN PUTATIVE |
AT4G15900 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2848
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G15310 | PredictedGene fusion method | FSW = 0.0245
| Unknown | ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G13210 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.1828
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT4G21110 | PredictedAffinity Capture-MS | FSW = 0.1741
| Unknown | G10 FAMILY PROTEIN |
AT1G17130 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2086
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT5G28740 | PredictedAffinity Capture-MS | FSW = 0.3033
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT2G32600 | PredictedAffinity Capture-MS | FSW = 0.1553
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT2G22480 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT1G17070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2976
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT4G21660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1897
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT1G80930 | PredictedAffinity Capture-MS | FSW = 0.2909
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT1G32270 | Predictedtwo hybridtwo hybridtwo hybrid | FSW = 0.0143
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT3G27730 | Predictedtwo hybrid | FSW = 0.0454
| Unknown | RCK (ROCK-N-ROLLERS) ATP BINDING / ATP-DEPENDENT HELICASE/ DNA HELICASE |
AT5G58380 | PredictedGene fusion method | FSW = 0.0169
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G43850 | PredictedGene fusion method | FSW = 0.0211
| Unknown | ANKYRIN PROTEIN KINASE PUTATIVE (APK1) |
AT1G31830 | PredictedGene fusion method | FSW = 0.0216
| Unknown | AMINO ACID PERMEASE FAMILY PROTEIN |
AT1G78490 | PredictedGene fusion method | FSW = 0.0437
| Unknown | CYP708A3 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G44970 | PredictedGene fusion method | FSW = 0.1169
| Unknown | CYTOCHROME P450 FAMILY PROTEIN |
AT2G27700 | PredictedGene fusion method | FSW = 0.0220
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454