Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G16710 - ( INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 10 plant structures EXPRESSED DURING LP10 ten leaves visible petal differentiation and expansion stage D bilateral stage E expanded cotyledon stage CONTAINS InterPro DOMAIN/s Pentatricopeptide repeat (InterProIPR002885) BEST Arabidopsis thaliana protein match is pentatricopeptide (PPR) repeat-containing protein (TAIRAT5G411701) Has 25882 Blast hits to 6002 proteins in 187 species Archae - 3 Bacteria - 22 Metazoa - 744 Fungi - 522 Plants - 23419 Viruses - 0 Other Eukaryotes - 1172 (source NCBI BLink) )

10 Proteins interacs with AT3G16710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G08710

Predicted

Gene fusion method

FSW = 0.8154

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN / UVB-RESISTANCE PROTEIN-RELATED
AT5G39830

Predicted

Gene fusion method

FSW = 0.4476

Unknown

DEG8 PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT3G52880

Predicted

Gene fusion method

FSW = 0.4476

Unknown

MONODEHYDROASCORBATE REDUCTASE PUTATIVE
AT5G59210

Predicted

Gene fusion method

Co-expression

FSW = 0.6909

Unknown

MYOSIN HEAVY CHAIN-RELATED
AT5G15730

Predicted

Gene fusion method

FSW = 0.4476

Unknown

SERINE/THREONINE PROTEIN KINASE PUTATIVE
AT1G47500

Predicted

Gene fusion method

FSW = 0.4629

Unknown

ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING
AT1G63660

Predicted

Gene fusion method

FSW = 0.0202

Unknown

GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT1G55270

Predicted

Gene fusion method

FSW = 0.2500

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT1G02000

Predicted

Gene fusion method

FSW = 0.2500

Unknown

GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2) UDP-GLUCURONATE 4-EPIMERASE/ CATALYTIC
AT4G26080

Predicted

Gene fusion method

FSW = 0.0627

Unknown

ABI1 (ABA INSENSITIVE 1) CALCIUM ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454