Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT3G16785 - ( PLDP1 (PHOSPHOLIPASE D P1) phospholipase D )

8 Proteins interacs with AT3G16785
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G75840

Predicted

in vitro

Enriched domain pair

Co-expression

FSW = 0.0517

Unknown

ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE
AT1G49340

Predicted

Synthetic Lethality

FSW = 0.0863

Unknown

ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE
AT4G34580

Predicted

Synthetic Lethality

synthetic growth defect

synthetic growth defect

Synthetic Lethality

FSW = 0.1201

Unknown

COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT1G10900

Predicted

in vivo

FSW = 0.0750

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT2G17800

Predicted

in vivo

Enriched domain pair

Co-expression

FSW = 0.0455

Unknown

ARAC1 GTP BINDING
AT2G37550

Predicted

interologs mapping

FSW = 0.0604

Unknown

AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT5G13570

Predicted

two hybrid

interaction prediction

FSW = 0.0383

Unknown

DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT4G09760

Predicted

Synthetic Lethality

FSW = 0.2735

Unknown

CHOLINE KINASE PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454