Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G16980 - ( NRPB9A DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding )
66 Proteins interacs with AT3G16980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G16390 | ExperimentalAffinity Capture-MS | FSW = 0.0474
| Class A:nucleus | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G12610 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defectinteraction prediction | FSW = 0.2054
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT4G07950 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1004
| Class C:nucleus | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT3G10330 | PredictedSynthetic Rescue | FSW = 0.0935
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT3G54610 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0540
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT1G03280 | Predictedtwo hybridSynthetic Lethality | FSW = 0.0853
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT1G01210 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0556
| Class C:nucleus | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT5G09920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic Lethalityinteraction prediction | FSW = 0.4176
| Class C:nucleus | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT5G09860 | PredictedSynthetic Rescue | FSW = 0.0907
| Class C:nucleus | NUCLEAR MATRIX PROTEIN-RELATED |
AT2G41630 | PredictedSynthetic Rescue | FSW = 0.0858
| Class C:nucleus | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT2G15430 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationReconstituted Complexinteraction prediction | FSW = 0.2877
| Class C:nucleus | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G18760 | PredictedPhenotypic Enhancement | FSW = 0.0554
| Class C:nucleus | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G36740 | Predictedsynthetic growth defect | FSW = 0.0918
| Class C:nucleus | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | Predictedinterologs mappingAffinity Capture-MSAffinity Capture-MSPhenotypic EnhancementEnriched domain pairCo-expression | FSW = 0.2332
| Class C:nucleus | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1142
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.1240
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G14040 | Predictedinteraction prediction | FSW = 0.0321
| Unknown | MITOCHONDRIAL PHOSPHATE TRANSPORTER |
AT1G53760 | Predictedtwo hybrid | FSW = 0.0464
| Unknown | UNKNOWN PROTEIN |
AT1G02130 | Predictedtwo hybridinteraction prediction | FSW = 0.0080
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT1G07770 | Predictedtwo hybridinteraction prediction | FSW = 0.0044
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G35800 | Predictedtwo hybridCo-purificationCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.2893
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G20080 | Predictedinteraction predictiontwo hybrid | FSW = 0.0152
| Unknown | NADH-CYTOCHROME B5 REDUCTASE PUTATIVE |
AT2G44950 | PredictedSynthetic Lethality | FSW = 0.0983
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT3G61530 | Predictedinteraction prediction | FSW = 0.0257
| Unknown | PANB2 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
AT2G46110 | Predictedtwo hybrid | FSW = 0.0343
| Unknown | KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
AT3G48850 | Predictedtwo hybrid | FSW = 0.0312
| Unknown | MITOCHONDRIAL PHOSPHATE TRANSPORTER PUTATIVE |
AT1G75510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3772
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT5G59180 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSinteraction prediction | FSW = 0.4777
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT3G52090 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4365
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0093
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G19910 | PredictedSynthetic Lethality | FSW = 0.1510
| Unknown | SOH1 FAMILY PROTEIN |
AT4G21710 | PredictedCo-purificationCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.3344
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G61700 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2682
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT2G15400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.4181
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G41910 | PredictedAffinity Capture-MS | FSW = 0.2467
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT1G51720 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | GLUTAMATE DEHYDROGENASE PUTATIVE |
AT1G52740 | PredictedSynthetic Lethality | FSW = 0.1115
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G54250 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.3854
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT2G06040 | PredictedPhenotypic Enhancement | FSW = 0.0479
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
AT2G47760 | PredictedAffinity Capture-MS | FSW = 0.0034
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT1G15780 | Predictedtwo hybrid | FSW = 0.1658
| Unknown | UNKNOWN PROTEIN |
AT1G54140 | PredictedSynthetic LethalityCo-expression | FSW = 0.0733
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.0661
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G39260 | Predictedsynthetic growth defect | FSW = 0.0070
| Unknown | RNA BINDING / BINDING / PROTEIN BINDING |
AT2G44150 | PredictedAffinity Capture-MS | FSW = 0.1983
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G22320 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defectinteraction prediction | FSW = 0.3267
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G51940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinteraction predictionCo-expression | FSW = 0.2874
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G23290 | PredictedSynthetic Lethality | FSW = 0.0298
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G41010 | PredictedAffinity Capture-Western | FSW = 0.2698
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G50320 | PredictedSynthetic Lethality | FSW = 0.1125
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G60040 | Predictedtwo hybridinteraction prediction | FSW = 0.1208
| Unknown | NRPC1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING / ZINC ION BINDING |
AT5G63670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2114
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G58003 | PredictedAffinity Capture-MS | FSW = 0.3344
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT5G08565 | PredictedAffinity Capture-MS | FSW = 0.2091
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G11475 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.2570
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G04630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2992
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G05670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1394
| Unknown | PHD FINGER FAMILY PROTEIN |
AT4G15475 | PredictedPhenotypic Enhancement | FSW = 0.0493
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT1G55255 | PredictedSynthetic Lethality | FSW = 0.0559
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT1G14400 | PredictedSynthetic Lethality | FSW = 0.0556
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT3G07740 | PredictedSynthetic Lethality | FSW = 0.0323
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G18460 | Predictedtwo hybridinteraction prediction | FSW = 0.0148
| Unknown | D-TYR-TRNA(TYR) DEACYLASE FAMILY PROTEIN |
AT5G15770 | Predictedinteraction predictiontwo hybrid | FSW = 0.0064
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
AT3G18430 | Predictedinteraction predictiontwo hybrid | FSW = 0.0047
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT4G16265 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0421
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454