Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G17390 - ( MTO3 (METHIONINE OVER-ACCUMULATOR 3) methionine adenosyltransferase )
40 Proteins interacs with AT3G17390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | Predictedtwo hybrid | FSW = 0.0254
| Class C:plasma membranenucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G02500 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.2051
| Class C:plasma membranenucleus | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT2G36880 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1580
| Class C:plasma membranenucleus | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT1G73230 | PredictedAffinity Capture-MS | FSW = 0.0457
| Class C:plasma membranenucleus | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT3G55360 | PredictedAffinity Capture-MS | FSW = 0.0157
| Class C:plasma membrane | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0072
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G60620 | Predictedtwo hybrid | FSW = 0.0730
| Class C:plasma membrane | PHOSPHOLIPID/GLYCEROL ACYLTRANSFERASE FAMILY PROTEIN |
AT2G47160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1157
| Class C:plasma membrane | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT5G19830 | PredictedAffinity Capture-MS | FSW = 0.0093
| Class C:nucleus | AMINOACYL-TRNA HYDROLASE |
AT4G01850 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.1964
| Class C:nucleus | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT3G57000 | Predictedinterologs mapping | FSW = 0.0200
| Class C:nucleus | NUCLEOLAR ESSENTIAL PROTEIN-RELATED |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0265
| Class C:nucleus | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0864
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0102
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0175
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT5G23670 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0124
| Unknown | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0166
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0365
| Unknown | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G10370 | Predictedtwo hybrid | FSW = 0.0483
| Unknown | SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
AT2G14580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0524
| Unknown | ATPRB1 |
AT5G63960 | Predictedtwo hybrid | FSW = 0.0486
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G00560 | PredictedAffinity Capture-Westernin vivo | FSW = 0.0473
| Unknown | METHIONINE ADENOSYLTRANSFERASE REGULATORY BETA SUBUNIT-RELATED |
AT2G35390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0535
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT1G16280 | PredictedAffinity Capture-MS | FSW = 0.0451
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G29630 | PredictedSynthetic Rescue | FSW = 0.0157
| Unknown | NUCLEASE |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0396
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34340 | Predictedinterologs mapping | FSW = 0.0559
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT3G08960 | Predictedtwo hybridinteraction prediction | FSW = 0.0511
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT3G20650 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0142
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G55020 | PredictedAffinity Capture-MS | FSW = 0.1459
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT4G36630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1024
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT4G38330 | Predictedtwo hybridinterologs mappingAffinity Capture-Western | FSW = 0.0945
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G14050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0804
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G19360 | Predictedtwo hybrid | FSW = 0.0453
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G09900 | Predictedtwo hybrid | FSW = 0.0203
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G26360 | Predictedtwo hybrid | FSW = 0.0309
| Unknown | CHAPERONIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454