Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G17520 - ( late embryogenesis abundant domain-containing protein / LEA domain-containing protein )

29 Proteins interacs with AT3G17520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G36750

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.3784

Unknown

QUINONE REDUCTASE FAMILY PROTEIN
AT1G31780

Predicted

Affinity Capture-MS

FSW = 0.0348

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G65240

Predicted

Reconstituted Complex

FSW = 0.1394

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT5G25400

Predicted

Affinity Capture-MS

FSW = 0.0556

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT1G22940

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

TH1 (THIAMINE REQUIRING 1) HYDROXYMETHYLPYRIMIDINE KINASE/ PHOSPHOMETHYLPYRIMIDINE KINASE/ THIAMIN-PHOSPHATE DIPHOSPHORYLASE
AT4G36640

Predicted

Phenotypic Enhancement

FSW = 0.0273

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.0313

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G12110

Predicted

Affinity Capture-MS

FSW = 0.0273

Unknown

NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT5G02490

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0962

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT4G33730

Predicted

Phenotypic Enhancement

FSW = 0.2161

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G01020

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.1190

Unknown

ARV1
AT4G39200

Predicted

Affinity Capture-MS

FSW = 0.0363

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT2G43460

Predicted

Reconstituted Complex

FSW = 0.1261

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38A)
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G02630

Predicted

Affinity Capture-MS

Affinity Capture-MS

co-fractionation

Co-fractionation

Affinity Capture-MS

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.2119

Unknown

EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8)
AT1G08260

Predicted

Reconstituted Complex

FSW = 0.1163

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G25260

Predicted

Affinity Capture-MS

FSW = 0.0185

Unknown

ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G52500

Predicted

Phenotypic Suppression

FSW = 0.0220

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT2G23070

Predicted

Phenotypic Enhancement

FSW = 0.0253

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G24960

Predicted

Phenotypic Enhancement

FSW = 0.0440

Unknown

UNKNOWN PROTEIN
AT2G32765

Predicted

Phenotypic Enhancement

FSW = 0.0816

Unknown

SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG
AT3G05040

Predicted

Affinity Capture-MS

FSW = 0.1299

Unknown

HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER
AT3G05960

Predicted

Phenotypic Enhancement

FSW = 0.0481

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G60710

Predicted

two hybrid

FSW = 0.0135

Unknown

ATB2 OXIDOREDUCTASE
AT2G01070

Predicted

Affinity Capture-Western

FSW = 0.2173

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK)
AT4G24040

Predicted

Phenotypic Enhancement

FSW = 0.1457

Unknown

TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT5G06420

Predicted

Affinity Capture-MS

FSW = 0.0135

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G11570

Predicted

Reconstituted Complex

FSW = 0.2865

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454