Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G17590 - ( BSH (BUSHY GROWTH) chromatin binding / protein binding )

83 Proteins interacs with AT3G17590
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G46020

Experimental

two hybrid

FSW = 0.0406

Class A:

nucleus

Class D:

plastid (p = 0.78)

 TRANSCRIPTION REGULATORY PROTEIN SNF2 PUTATIVE
AT2G33610

Experimental

two hybrid

two hybrid

FSW = 0.1934

Class A:

nucleus

Class D:

plastid (p = 0.78)

 ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING
AT2G47620

Experimental

two hybrid

FSW = 0.0398

Class A:

nucleus

 ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT4G16280

Experimental

two hybrid

FSW = 0.0624

Unknown

 FCA RNA BINDING
AT5G20020

Predicted

Reconstituted Complex

FSW = 0.0161

Class C:

nucleus

 RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT4G34670

Predicted

two hybrid

FSW = 0.0089

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT5G14170

Predicted

two hybrid

two hybrid

FSW = 0.0235

Class C:

nucleus

 CHC1
AT3G54610

Predicted

synthetic growth defect

synthetic growth defect

Affinity Capture-Western

interaction prediction

Co-expression

FSW = 0.0946

Class C:

nucleus

 GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G01890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1067

Class C:

nucleus

 SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G34430

Predicted

Co-purification

two hybrid

Affinity Capture-Western

Co-purification

FSW = 0.0322

Class C:

nucleus

 CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G52250

Predicted

Co-purification

FSW = 0.0063

Class C:

nucleus

 DNA BINDING / TRANSCRIPTION FACTOR
AT5G16820

Predicted

co-fractionation

Co-fractionation

FSW = 0.0092

Class C:

nucleus

 HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT3G44530

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.1575

Class C:

nucleus

 HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G27720

Predicted

two hybrid

interaction prediction

FSW = 0.0057

Class C:

nucleus

 EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G63210

Predicted

Synthetic Rescue

FSW = 0.0571

Class C:

nucleus

 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT5G19310

Predicted

Phenotypic Enhancement

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-purification

Co-purification

Phenotypic Enhancement

Phenotypic Enhancement

Affinity Capture-Western

Co-purification

Affinity Capture-MS

interaction prediction

FSW = 0.1823

Class C:

nucleus

 HOMEOTIC GENE REGULATOR PUTATIVE
AT1G21700

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1091

Class C:

nucleus

 ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT3G06010

Predicted

Co-purification

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Co-purification

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1766

Class C:

nucleus

 ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G38130

Predicted

Co-purification

FSW = 0.0504

Class C:

nucleus

 HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT1G18450

Predicted

Co-purification

FSW = 0.0471

Class C:

nucleus

 ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.0147

Class C:

nucleus

 RNA HELICASE PUTATIVE
AT1G67970

Predicted

co-fractionation

Co-fractionation

FSW = 0.0188

Class C:

nucleus

 AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR
AT1G65440

Predicted

Synthetic Rescue

FSW = 0.0314

Class C:

nucleus

 GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT2G37470

Predicted

Affinity Capture-Western

synthetic growth defect

FSW = 0.0072

Class C:

nucleus

 HISTONE H2B PUTATIVE
AT5G17020

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0208

Class C:

nucleus

 XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR
AT1G33590

Predicted

two hybrid

FSW = 0.0124

Unknown

 DISEASE RESISTANCE PROTEIN-RELATED / LRR PROTEIN-RELATED
AT1G64790Predicted

Phenotypic Enhancement

FSW = 0.0355

Unknown

 BINDING
AT3G04840

Predicted

two hybrid

Co-expression

FSW = 0.0115

Unknown

 40S RIBOSOMAL PROTEIN S3A (RPS3AA)
AT5G16630

Predicted

Affinity Capture-Western

FSW = 0.0078

Unknown

 RAD4 DAMAGED DNA BINDING
AT4G35800

Predicted

Co-purification

co-fractionation

Co-fractionation

Co-purification

FSW = 0.0503

Unknown

 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G58230

Predicted

Co-purification

FSW = 0.0822

Unknown

 MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT2G44950

Predicted

synthetic growth defect

FSW = 0.0584

Unknown

 HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G02580

Predicted

Phenotypic Suppression

FSW = 0.0261

Unknown

 STE1 (STEROL 1) C-5 STEROL DESATURASE
AT2G31970

Predicted

Phenotypic Suppression

FSW = 0.0229

Unknown

 RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT2G23380

Predicted

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.0180

Unknown

 CLF (CURLY LEAF) TRANSCRIPTION FACTOR
AT2G22310

Predicted

Phenotypic Enhancement

FSW = 0.0485

Unknown

 ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT4G02020

Predicted

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.0773

Unknown

 SWN (SWINGER) TRANSCRIPTION FACTOR
AT3G48470

Predicted

Phenotypic Enhancement

FSW = 0.0045

Unknown

 EMB2423 (EMBRYO DEFECTIVE 2423)
AT1G26590

Predicted

two hybrid

FSW = 0.0310

Unknown

 ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G02080

Predicted

two hybrid

FSW = 0.0143

Unknown

 ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4) TRANSCRIPTION FACTOR
AT3G61740

Predicted

Phenotypic Enhancement

FSW = 0.0115

Unknown

 SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G08580

Predicted

two hybrid

FSW = 0.0117

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S MICRO-FIBRILLAR-ASSOCIATED 1 C-TERMINAL (INTERPROIPR009730) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G179001) HAS 39042 BLAST HITS TO 22601 PROTEINS IN 1140 SPECIES ARCHAE - 179 BACTERIA - 2955 METAZOA - 18595 FUNGI - 3264 PLANTS - 1100 VIRUSES - 245 OTHER EUKARYOTES - 12704 (SOURCE NCBI BLINK)
AT5G17900

Predicted

two hybrid

two hybrid

FSW = 0.0115

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN EXTRACELLULAR REGION CONTAINS INTERPRO DOMAIN/S MICRO-FIBRILLAR-ASSOCIATED 1 C-TERMINAL (INTERPROIPR009730) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G085801) HAS 36643 BLAST HITS TO 21191 PROTEINS IN 1090 SPECIES ARCHAE - 183 BACTERIA - 2726 METAZOA - 17629 FUNGI - 3036 PLANTS - 994 VIRUSES - 215 OTHER EUKARYOTES - 11860 (SOURCE NCBI BLINK)
AT5G42400

Predicted

Phenotypic Enhancement

FSW = 0.0180

Unknown

 SDG25 (SET DOMAIN PROTEIN 25)
AT5G55000

Predicted

two hybrid

FSW = 0.0124

Unknown

 FIP2 PROTEIN BINDING / VOLTAGE-GATED POTASSIUM CHANNEL
AT5G07450

Predicted

two hybrid

two hybrid

FSW = 0.0114

Unknown

 CYCP43 (CYCLIN P43) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G36160

Predicted

two hybrid

FSW = 0.0218

Unknown

 AMINOTRANSFERASE-RELATED
AT5G61650

Predicted

two hybrid

FSW = 0.0119

Unknown

 CYCP42 (CYCLIN P42) CYCLIN-DEPENDENT PROTEIN KINASE
AT5G64370

Predicted

two hybrid

two hybrid

FSW = 0.0114

Unknown

 BETA-UP (BETA-UREIDOPROPIONASE) BETA-UREIDOPROPIONASE
AT5G67540

Predicted

two hybrid

FSW = 0.0029

Unknown

 GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT1G01160

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0310

Unknown

 SSXT PROTEIN-RELATED / TRANSCRIPTION CO-ACTIVATOR-RELATED
AT1G70060Predicted

Co-purification

FSW = 0.0727

Unknown

 SNL4 (SIN3-LIKE 4)
AT2G39840

Predicted

Reconstituted Complex

Affinity Capture-Western

Phenotypic Enhancement

FSW = 0.0332

Unknown

 TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G12980

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

FSW = 0.0490

Unknown

 HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT4G10070

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0303

Unknown

 KH DOMAIN-CONTAINING PROTEIN
AT5G45600

Predicted

Affinity Capture-Western

Reconstituted Complex

Phenotypic Enhancement

FSW = 0.0748

Unknown

 GAS41 PROTEIN BINDING
AT5G59160

Predicted

Phenotypic Enhancement

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0392

Unknown

 TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G63610

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

Phenotypic Suppression

FSW = 0.0918

Unknown

 CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G15020

Predicted

Co-purification

FSW = 0.0251

Unknown

 SNL2 (SIN3-LIKE 2)
AT5G55190

Predicted

Reconstituted Complex

FSW = 0.0187

Unknown

 RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G32130

Predicted

Synthetic Rescue

Phenotypic Suppression

FSW = 0.1270

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G08780

Predicted

Phenotypic Enhancement

FSW = 0.0354

Unknown

 AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G15780

Predicted

two hybrid

FSW = 0.1122

Unknown

 UNKNOWN PROTEIN
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.0615

Unknown

 UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.1023

Unknown

 TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.0853

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22480

Predicted

Phenotypic Enhancement

FSW = 0.0325

Unknown

 PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G22590

Predicted

Phenotypic Enhancement

FSW = 0.0685

Unknown

 RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G45630

Predicted

Phenotypic Enhancement

FSW = 0.0779

Unknown

 RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G46320Predicted

Phenotypic Enhancement

FSW = 0.0306

Unknown

 HISTONE H4
AT3G51270

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0372

Unknown

 ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT5G07760Predicted

interologs mapping

FSW = 0.0188

Unknown

 FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN
AT5G10260

Predicted

Phenotypic Suppression

FSW = 0.0513

Unknown

 ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10390Predicted

Colocalization

FSW = 0.0519

Unknown

 HISTONE H3
AT5G10960

Predicted

Synthetic Lethality

FSW = 0.0387

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0539

Unknown

 ORMDL FAMILY PROTEIN
AT5G48640

Predicted

Phenotypic Suppression

FSW = 0.0857

Unknown

 CYCLIN FAMILY PROTEIN
AT5G61150

Predicted

Phenotypic Enhancement

FSW = 0.0619

Unknown

 VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.1082

Unknown

 LA DOMAIN-CONTAINING PROTEIN
AT1G55255Predicted

synthetic growth defect

FSW = 0.0258

Unknown

 LA DOMAIN-CONTAINING PROTEIN
AT1G15920

Predicted

Synthetic Lethality

FSW = 0.0352

Unknown

 CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G53970

Predicted

two hybrid

FSW = 0.0262

Unknown

 AMINOTRANSFERASE PUTATIVE
AT1G53645

Predicted

two hybrid

Co-expression

FSW = 0.0115

Unknown

 HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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