Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G17750 - ( protein kinase family protein )
25 Proteins interacs with AT3G17750Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10450 | PredictedAffinity Capture-MS | FSW = 0.0189
| Class C:plasma membrane | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G73450 | PredictedPhylogenetic profile method | FSW = 0.0282
| Class C:plasma membrane | PROTEIN KINASE PUTATIVE |
AT5G13300 | Predictedtwo hybrid | FSW = 0.0593
| Class C:plasma membrane | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT5G11980 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT-RELATED / COG COMPLEX COMPONENT-RELATED |
AT3G20550 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | DDL (DAWDLE) |
AT4G16760 | Predictedtwo hybrid | FSW = 0.0154
| Unknown | ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE |
AT2G20420 | Predictedtwo hybrid | FSW = 0.0497
| Unknown | SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE |
AT5G38470 | Predictedtwo hybrid | FSW = 0.0222
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G24520 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0750
| Unknown | TTG1 (TRANSPARENT TESTA GLABRA 1) DNA BINDING / NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G20850 | Predictedtwo hybrid | FSW = 0.0291
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G35530 | Predictedtwo hybrid | FSW = 0.0238
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G25740 | Predictedtwo hybrid | FSW = 0.0714
| Unknown | ATP-DEPENDENT PROTEASE LA (LON) DOMAIN-CONTAINING PROTEIN |
AT4G32660 | Predictedtwo hybrid | FSW = 0.1605
| Unknown | AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G19400 | Predictedtwo hybrid | FSW = 0.0683
| Unknown | SMG7 |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0344
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G48630 | Predictedtwo hybrid | FSW = 0.0259
| Unknown | CYCLIN FAMILY PROTEIN |
AT3G12980 | PredictedAffinity Capture-Western | FSW = 0.1350
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT1G29810 | Predictedin vivotwo hybridAffinity Capture-MS | FSW = 0.0952
| Unknown | DEHYDRATASE FAMILY |
AT3G19670 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | PROTEIN BINDING |
AT3G57870 | Predictedtwo hybridtwo hybridin vivoin vitro | FSW = 0.1143
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT4G09200 | Predictedtwo hybridin vivoin vitrotwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.0357
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT4G11330 | Predictedin vitro | FSW = 0.0059
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G48700 | Predictedtwo hybrid | FSW = 0.0762
| Unknown | UBIQUITIN-RELATED |
AT4G02430 | Predictedbiochemical | FSW = 0.0970
| Unknown | PRE-MRNA SPLICING FACTOR PUTATIVE / SR1 PROTEIN PUTATIVE |
AT4G36980 | Predictedbiochemical | FSW = 0.0645
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454