Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G17750 - ( protein kinase family protein )

25 Proteins interacs with AT3G17750
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G10450

Predicted

Affinity Capture-MS

FSW = 0.0189

Class C:

plasma membrane

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G73450

Predicted

Phylogenetic profile method

FSW = 0.0282

Class C:

plasma membrane

PROTEIN KINASE PUTATIVE
AT5G13300

Predicted

two hybrid

FSW = 0.0593

Class C:

plasma membrane

SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING
AT5G11980

Predicted

two hybrid

FSW = 0.0334

Unknown

CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT-RELATED / COG COMPLEX COMPONENT-RELATED
AT3G20550

Predicted

Affinity Capture-MS

FSW = 0.0263

Unknown

DDL (DAWDLE)
AT4G16760

Predicted

two hybrid

FSW = 0.0154

Unknown

ACX1 (ACYL-COA OXIDASE 1) ACYL-COA OXIDASE
AT2G20420

Predicted

two hybrid

FSW = 0.0497

Unknown

SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE
AT5G38470

Predicted

two hybrid

FSW = 0.0222

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G24520

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0750

Unknown

TTG1 (TRANSPARENT TESTA GLABRA 1) DNA BINDING / NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G20850

Predicted

two hybrid

FSW = 0.0291

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G35530Predicted

two hybrid

FSW = 0.0238

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G25740

Predicted

two hybrid

FSW = 0.0714

Unknown

ATP-DEPENDENT PROTEASE LA (LON) DOMAIN-CONTAINING PROTEIN
AT4G32660

Predicted

two hybrid

FSW = 0.1605

Unknown

AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G19400

Predicted

two hybrid

FSW = 0.0683

Unknown

SMG7
AT5G45190

Predicted

two hybrid

FSW = 0.0344

Unknown

CYCLIN FAMILY PROTEIN
AT5G48630

Predicted

two hybrid

FSW = 0.0259

Unknown

CYCLIN FAMILY PROTEIN
AT3G12980

Predicted

Affinity Capture-Western

FSW = 0.1350

Unknown

HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT1G29810

Predicted

in vivo

two hybrid

Affinity Capture-MS

FSW = 0.0952

Unknown

DEHYDRATASE FAMILY
AT3G19670Predicted

Affinity Capture-MS

FSW = 0.0282

Unknown

PROTEIN BINDING
AT3G57870

Predicted

two hybrid

two hybrid

in vivo

in vitro

FSW = 0.1143

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT4G09200Predicted

two hybrid

in vivo

in vitro

two hybrid

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0357

Unknown

SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN
AT4G11330

Predicted

in vitro

FSW = 0.0059

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT5G48700

Predicted

two hybrid

FSW = 0.0762

Unknown

UBIQUITIN-RELATED
AT4G02430

Predicted

biochemical

FSW = 0.0970

Unknown

PRE-MRNA SPLICING FACTOR PUTATIVE / SR1 PROTEIN PUTATIVE
AT4G36980

Predicted

biochemical

FSW = 0.0645

Unknown

UNKNOWN PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454