Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G17810 - ( dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein )

7 Proteins interacs with AT3G17810
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G11910

Predicted

two hybrid

FSW = 0.1131

Class C:

plastid

UNKNOWN PROTEIN
AT5G43310

Predicted

two hybrid

FSW = 0.0585

Unknown

COP1-INTERACTING PROTEIN-RELATED
AT4G20325

Predicted

two hybrid

FSW = 0.0410

Unknown

UNKNOWN PROTEIN
AT3G18370

Predicted

two hybrid

FSW = 0.0941

Unknown

ATSYTF
AT4G16800

Predicted

two hybrid

two hybrid

FSW = 0.0618

Unknown

ENOYL-COA HYDRATASE PUTATIVE
AT5G09230

Predicted

two hybrid

two hybrid

FSW = 0.0457

Unknown

SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT3G25230

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0320

Unknown

ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454