Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G18165 - ( MOS4 (Modifier of snc14) )
28 Proteins interacs with AT3G18165| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G20960
   | Experimental | FSW = 0.1982
| Class A:unclearnucleusClass D:cytosol (p = 0.67) | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G09770
| Experimentalcoimmunoprecipitation | FSW = 0.2324
| Class A:nucleusClass B:unclearplastidClass D:nucleus (p = 0.78) | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G64270
| Experimental | FSW = 0.1479
| Class A:nucleusClass B:unclearplastid | SPLICING FACTOR PUTATIVE |
| AT1G04510
| Experimental | FSW = 0.1313
| Class A:nucleusClass B:unclearClass D:nucleus (p = 0.78)cytosol (p = 0.67) | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G34430
| Experimental | FSW = 0.0354
| Class A:nucleusClass B:unclearClass D:nucleus (p = 0.78) | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT1G77180
| Experimental | FSW = 0.0949
| Class A:nucleusClass B:unclearClass D:nucleus (p = 0.78) | CHROMATIN PROTEIN FAMILY |
| AT5G42080
| Experimental | FSW = 0.0563
| Class B:vacuoleunclearplastidplasma membranenucleuscytosolcytoskeletoncell plateClass D:nucleus (p = 0.78)cytosol (p = 0.67) | ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT3G60190
| Experimental | FSW = 0.1125
| Class B:vacuoleunclearplasma membranenucleusmitochondrioncell plateClass D:cytosol (p = 0.67) | ADL1E (ARABIDOPSIS DYNAMIN-LIKE 1E) GTP BINDING / GTPASE |
| AT3G20820
| Experimental | FSW = 0.0516
| Class B:unclearplastidnucleusextracellularClass D:extracellular (p = 0.86)cytosol (p = 0.67) | LEUCINE-RICH REPEAT FAMILY PROTEIN |
| AT3G18790
| Experimental | FSW = 0.2011
| Class B:unclearplastidnucleusClass D:nucleus (p = 0.78)cytosol (p = 0.67) | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
| AT2G33340
| Experimental | FSW = 0.1201
| Class B:unclearplastidnucleusClass D:nucleus (p = 0.78)cytosol (p = 0.67) | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT1G80070
| Experimental | FSW = 0.1563
| Class B:unclearplastidnucleusClass D:nucleus (p = 0.78) | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT3G15730
| Experimental | FSW = 0.0573
| Class B:unclearplastidnucleusClass D:cytosol (p = 0.67) | PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) PHOSPHOLIPASE D |
| AT5G55280
| Experimental | FSW = 0.0388
| Class B:unclearplastidnucleusClass D:cytosol (p = 0.67) | FTSZ1-1 PROTEIN BINDING / STRUCTURAL MOLECULE |
| AT1G06220
| Experimental | FSW = 0.2286
| Class B:unclearplasma membranenucleusClass D:cytosol (p = 0.67) | MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT4G19410
| Experimental | FSW = 0.1032
| Class B:unclearnucleusextracellularClass D:extracellular (p = 0.86) | PECTINACETYLESTERASE PUTATIVE |
| AT4G15900
| Experimentalcoimmunoprecipitation | FSW = 0.1330
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G28740
| Experimental | FSW = 0.3122
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
| AT1G10580
| Experimental | FSW = 0.1832
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G32490
| Experimental | FSW = 0.0224
| Unknown | ESP3 (ENHANCED SILENCING PHENOTYPE 3) ATP BINDING / ATP-DEPENDENT RNA HELICASE/ ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G41770
| Experimental | FSW = 0.1749
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT1G15200
| Experimental | FSW = 0.0536
| Unknown | PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN |
| AT1G07360
| Experimental | FSW = 0.0430
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G43770
| Experimental | FSW = 0.1433
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G19990
| Predictedtwo hybridtwo hybrid | FSW = 0.0169
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
| AT5G03730
| Predictedin vitrotwo hybrid | FSW = 0.0129
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
| AT3G12280
| PredictedPhenotypic Enhancement | FSW = 0.0186
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
| AT5G20000
| Predictedtwo hybrid | FSW = 0.0451
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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